Hoolock leuconedys

eastern hoolock gibbon

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metadata.yaml (view) (edit on github)
species:
  short_name: mHooLeu
  name: Hoolock leuconedys
  common_name: eastern hoolock gibbon
  taxon_id: 593543
  order:
    name: Primates
  family:
    name: Hominidae
  individuals:
  -
      short_name: mHooLeu1
      name: Arthur
      biosample_id: SAMN33424221
      strain: null
      alt_ids:
      - Arthur_HLE
      - HLE304
      sex: male
      description: null
      provider: Lucia Carbone (Oregon Health & Science University)
      mother: null
      father: null
      samples:
      -
         sample_id: mHooLeu1.LCL1
         tissue: lymphoblastoid cell line
         dev_stage: adult
         sample_biosample_id: null
  -
      short_name: mHooLeu2
      name: Betty
      biosample_id: null
      strain: null
      alt_ids:
      - Betty_HLE
      sex: female
      description: null
      provider: Lucia Carbone (Oregon Health & Science University)
      mother: null
      father: null
      samples:
      -
         sample_id: mHooLeu2.LCL1
         tissue: lymphoblastoid cell line
         dev_stage: adult
         sample_biosample_id: SAMN12702557
         provider: Lucia Carbone (Oregon Health & Science University)
         description: The LCL cell line was generated by Lucia Carbone at OHSU. The blood for the generation of the cell line was provided by the Gibbon Conservation Center.
  genome_size: 3230000000
  genome_size_method: GoaT ancestral inferred
  project: [ ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (subreads) mHooLeu1 4619.95 Gbp 1430.32x 8.1 TiB
PacBio HiFi (.fq) mHooLeu1 242.17 Gbp 74.98x 176.2 GiB
mHooLeu2 51.61 Gbp 15.98x 33.9 GiB
PacBio HiFi (.bam) mHooLeu1 482.34 Gbp 149.33x 1.6 TiB
mHooLeu2 57.66 Gbp 17.85x 192.5 GiB
Oxford Nanopore Simplex mHooLeu1 246.60 Gbp 76.35x 201.7 GiB
mHooLeu2 392.63 Gbp 121.56x 196.4 GiB
Dovetail Genomics mHooLeu1 144.60 Gbp 44.77x 84.7 GiB
mHooLeu2 87.15 Gbp 26.98x 42.1 GiB
Illumina mHooLeu1 491.26 Gbp 152.09x 226.4 GiB
mHooLeu2 172.59 Gbp 53.43x 84.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.23 Gbp.
Last upload on 25 March 2025.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mHooLeu1 PacBio HiFi (subreads) 4619.95 Gbp 1430.32x 8.1 TiB
PacBio HiFi (.fq) 242.17 Gbp 74.98x 176.2 GiB
PacBio HiFi (.bam) 482.34 Gbp 149.33x 1.6 TiB
Oxford Nanopore Simplex 246.60 Gbp 76.35x 201.7 GiB
Dovetail Genomics 144.60 Gbp 44.77x 84.7 GiB
Illumina 491.26 Gbp 152.09x 226.4 GiB
mHooLeu2 PacBio HiFi (.fq) 51.61 Gbp 15.98x 33.9 GiB
PacBio HiFi (.bam) 57.66 Gbp 17.85x 192.5 GiB
Oxford Nanopore Simplex 392.63 Gbp 121.56x 196.4 GiB
Dovetail Genomics 87.15 Gbp 26.98x 42.1 GiB
Illumina 172.59 Gbp 53.43x 84.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.23 Gbp.
Last upload on 25 March 2025.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_verkko_HiFi_ONT_Hi-C_v2.2.1 from 4 April 2025
mHooLeu1.HiC.hap1.20250404.fasta.gz (812.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 185.86 Mbp 2 209.77 Mbp
20 4 173.95 Mbp 3 205.96 Mbp
30 6 162.00 Mbp 5 185.86 Mbp
40 8 130.85 Mbp 7 173.30 Mbp
50 11 112.02 Mbp 9 162.00 Mbp
60 14 111.41 Mbp 11 130.85 Mbp
70 17 89.53 Mbp 14 119.87 Mbp
80 21 64.01 Mbp 17 105.04 Mbp
90 0 0
100 0 0
0.882x 43 2.85 Gbp 35 2.85 Gbp
NG based on genome size 3.23 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_verkko_HiFi_ONT_Hi-C_v2.2.1 from 4 April 2025
mHooLeu1.HiC.hap2.20250404.fasta.gz (777.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 205.77 Mbp 2 209.95 Mbp
20 4 174.79 Mbp 3 205.77 Mbp
30 5 172.74 Mbp 5 184.55 Mbp
40 8 125.80 Mbp 7 172.74 Mbp
50 11 107.16 Mbp 9 162.66 Mbp
60 14 90.55 Mbp 11 125.80 Mbp
70 17 85.44 Mbp 14 112.28 Mbp
80 22 54.10 Mbp 17 90.74 Mbp
90 0 0
100 0 0
0.844x 50 2.73 Gbp 40 2.73 Gbp
NG based on genome size 3.23 Gbp.
Individual 2 Haplotype 1 Assembly
Version assembly_verkko_HIFIASM-corrected-ONT_ONT_Hi-C_v2.2.1 from 4 April 2025
mHooLeu2.HiC.hap1.20250404.fasta.gz (754.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 178.44 Mbp 2 208.75 Mbp
20 4 134.12 Mbp 3 205.66 Mbp
30 7 117.64 Mbp 5 184.51 Mbp
40 10 109.14 Mbp 7 163.29 Mbp
50 13 76.79 Mbp 9 130.56 Mbp
60 18 57.93 Mbp 12 121.13 Mbp
70 24 46.75 Mbp 15 109.14 Mbp
80 33 27.43 Mbp 18 91.07 Mbp
90 0 0
100 0 0
0.870x 69 2.81 Gbp 39 2.81 Gbp
NG based on genome size 3.23 Gbp.
Individual 2 Haplotype 2 Assembly
Version assembly_verkko_HIFIASM-corrected-ONT_ONT_Hi-C_v2.2.1 from 4 April 2025
mHooLeu2.HiC.hap2.20250404.fasta.gz (762.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 184.97 Mbp 1 328.35 Mbp
20 4 162.17 Mbp 3 205.28 Mbp
30 6 130.97 Mbp 5 184.97 Mbp
40 9 111.52 Mbp 6 177.72 Mbp
50 13 80.85 Mbp 8 162.17 Mbp
60 17 63.86 Mbp 11 127.13 Mbp
70 23 49.43 Mbp 13 120.03 Mbp
80 30 38.82 Mbp 16 106.78 Mbp
90 0 0
100 0 0
0.881x 61 2.85 Gbp 30 2.85 Gbp
NG based on genome size 3.23 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.