Kogia breviceps

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank mKogBre1: GCA_026419965.1 mKogBre1: GCA_026419985.1
ENA mKogBre1: GCA_026419965.1 mKogBre1: GCA_026419985.1
UCSC Genome Browser mKogBre1: GCA_026419965.1 mKogBre1: GCA_026419985.1

No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (subreads) mKogBre1 463.83 Gbp N/A 1.0 TiB
PacBio HiFi (.fq) mKogBre1 119.84 Gbp N/A 93.9 GiB
PacBio HiFi (.bam) mKogBre1 119.59 Gbp N/A 408.7 GiB
Bionano mKogBre1 N/A N/A 801.5 MiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 3 May 2022.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mKogBre1 PacBio HiFi (subreads) 463.83 Gbp N/A 1.0 TiB
PacBio HiFi (.fq) 119.84 Gbp N/A 93.9 GiB
PacBio HiFi (.bam) 119.59 Gbp N/A 408.7 GiB
Bionano N/A N/A 801.5 MiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 3 May 2022.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 3 November 2022
mKogBre1.hap1.cur.20221103.fasta.gz (706.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 1 122.12 Mbp 1 201.99 Mbp
20 4 69.84 Mbp 2 188.80 Mbp
30 8 53.58 Mbp 3 184.93 Mbp
40 13 47.07 Mbp 5 147.15 Mbp
50 19 42.78 Mbp 7 122.39 Mbp
60 26 31.84 Mbp 9 116.16 Mbp
70 34 29.41 Mbp 12 102.71 Mbp
80 45 20.18 Mbp 14 91.11 Mbp
90 64 9.44 Mbp 17 78.20 Mbp
100 722 9.55 Kbp 579 9.55 Kbp
1.000x 723 2.55 Gbp 580 2.56 Gbp
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 2 November 2022
mKogBre1.hap2.cur.20221102.fasta.gz (710.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 92.56 Mbp 1 195.90 Mbp
20 4 86.54 Mbp 2 191.84 Mbp
30 8 57.81 Mbp 4 157.65 Mbp
40 13 49.77 Mbp 5 146.29 Mbp
50 19 40.42 Mbp 7 120.41 Mbp
60 26 31.24 Mbp 9 115.00 Mbp
70 35 22.44 Mbp 12 98.70 Mbp
80 50 14.27 Mbp 15 90.43 Mbp
90 73 7.34 Mbp 18 60.01 Mbp
100 528 9.51 Kbp 390 9.51 Kbp
1.000x 529 2.61 Gbp 391 2.61 Gbp
NG based on genome size .
Assembly Metadata
assembly_vgp_standard_2.0/mKogBre1.yaml (view)
species: Kogia_breviceps
specimen: mKogBre1
projects:
  - vgp
mat: s3://genomeark/species/Kogia_breviceps/mKogBre1/assembly_vgp_standard_2.0/mKogBre1.20220510.hap1.s2.fasta
pat: s3://genomeark/species/Kogia_breviceps/mKogBre1/assembly_vgp_standard_2.0/mKogBre1.20220510.hap2.s2.fasta
mat_hic_bam: s3://genomeark/species/Kogia_breviceps/mKogBre1/assembly_vgp_standard_2.0/evaluation/pretext/s2/mKogBre1.hap1.s2.bam
pat_hic_bam: s3://genomeark/species/Kogia_breviceps/mKogBre1/assembly_vgp_standard_2.0/evaluation/pretext/s2/mKogBre1.hap2.s2.bam
mat_pretext: s3://genomeark/species/Kogia_breviceps/mKogBre1/assembly_vgp_standard_2.0/evaluation/pretext/s2/mKogBre1.hap1.s2.pretext
pat_pretext: s3://genomeark/species/Kogia_breviceps/mKogBre1/assembly_vgp_standard_2.0/evaluation/pretext/s2/mKogBre1.hap2.s2.pretext
kmer_spectra_img: currently NA.
pipeline:
  - hifiasm (0.16.1-r375)
  - solve (3.7)
  - salsa (2.3)
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.