Lampanyctus macdonaldi

rakery beaconlamp

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fLamMac
  name: Lampanyctus macdonaldi
  taxon_id: 521416
  common_name: rakery beaconlamp
  order:
    name: Myctophiformes
  family:
    name: Myctophidae
  individuals:
    - short_name: fLamMac1
      biosample_id: SAMEA12815438
      sex:
  genome_size: 1907100000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fLamMac1 110.99 Gbp 58.20x 49.3 GiB
Arima fLamMac1 126.67 Gbp 66.42x 39.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.91 Gbp.
Last upload on 29 March 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fLamMac1 PacBio HiFi (.bam) 110.99 Gbp 58.20x 49.3 GiB
Arima 126.67 Gbp 66.42x 39.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.91 Gbp.
Last upload on 29 March 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 11 July 2025
fLamMac1.hap1.cur.20250711.fasta.gz (455.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 39 3.90 Mbp 3 72.77 Mbp
20 95 3.00 Mbp 6 69.35 Mbp
30 167 2.36 Mbp 8 67.26 Mbp
40 259 1.86 Mbp 11 63.99 Mbp
50 375 1.43 Mbp 14 62.20 Mbp
60 533 1.02 Mbp 17 60.69 Mbp
70 765 0.65 Mbp 21 53.50 Mbp
80 1241 188.49 Kbp 25 1.95 Mbp
90 0 0
100 0 0
0.873x 4618 1.66 Gbp 2957 1.67 Gbp
NG based on genome size 1.91 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 11 July 2025
fLamMac1.hap2.cur.20250711.fasta.gz (461.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 38 3.91 Mbp 3 73.11 Mbp
20 95 2.87 Mbp 6 70.67 Mbp
30 170 2.28 Mbp 8 67.43 Mbp
40 265 1.78 Mbp 11 63.59 Mbp
50 387 1.39 Mbp 14 61.50 Mbp
60 546 1.04 Mbp 17 59.94 Mbp
70 776 0.67 Mbp 21 54.59 Mbp
80 1221 249.46 Kbp 24 49.30 Mbp
90 0 0
100 0 0
0.881x 4020 1.68 Gbp 2340 1.68 Gbp
NG based on genome size 1.91 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 10 June 2024
fLamMac1.MT.20240610.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.