Lampetra fluviatilis

European river lamprey

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: kcLamFluv
  name: Lampetra fluviatilis
  taxon_id: 7748
  common_name: European river lamprey
  order:
    name: Petromyzontiformes
  family:
    name: Petromyzontidae
  individuals:
    - short_name: kcLamFluv1
      biosample_id: SAMEA111528664
      sex: female
  genome_size: 1339860000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) kcLamFluv1 28.60 Gbp 21.34x 74.0 GiB
Arima kcLamFluv1 89.16 Gbp 66.55x 29.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.34 Gbp.
Last upload on 7 November 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
kcLamFluv1 PacBio HiFi (.bam) 28.60 Gbp 21.34x 74.0 GiB
Arima 89.16 Gbp 66.55x 29.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.34 Gbp.
Last upload on 7 November 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 10 July 2024
kcLamFluv1.pri.cur.20240710.fasta.gz (275.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 28 3.65 Mbp 4 32.82 Mbp
20 73 2.50 Mbp 11 15.82 Mbp
30 137 1.76 Mbp 20 14.05 Mbp
40 229 1.24 Mbp 30 13.01 Mbp
50 365 0.79 Mbp 41 11.34 Mbp
60 595 423.90 Kbp 54 9.56 Mbp
70 1160 133.98 Kbp 71 5.77 Mbp
80 0 0
90 0 0
100 0 0
0.778x 3292 1.04 Gbp 1497 1.04 Gbp
NG based on genome size 1.34 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 10 July 2024
kcLamFluv1.alt.cur.20240710.fasta.gz (253.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 74 1.36 Mbp 74 1.36 Mbp
20 203 0.80 Mbp 203 0.80 Mbp
30 403 0.57 Mbp 403 0.57 Mbp
40 693 379.48 Kbp 693 380.99 Kbp
50 1172 202.88 Kbp 1171 203.29 Kbp
60 2178 84.71 Kbp 2174 84.94 Kbp
70 5582 14.57 Kbp 5572 14.59 Kbp
80 0 0
90 0 0
100 0 0
0.701x 5726 0.94 Gbp 5717 0.94 Gbp
NG based on genome size 1.34 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 7 November 2023
kcLamFluv1.MT.20231107.fasta.gz (5.2 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.