Larus canus

Common Gull

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bLarCan
  name: Larus canus
  taxon_id: 28681
  common_name: Common Gull
  order:
    name: Charadriiformes
  family:
    name: Laridae
  individuals:
    - short_name: bLarCan2
      biosample_id: SAMEA115168455
      sex: male
  genome_size: 1432770000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bLarCan2 89.29 Gbp 62.32x 32.4 GiB
Arima bLarCan2 152.60 Gbp 106.51x 43.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.43 Gbp.
Last upload on 22 October 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bLarCan2 PacBio HiFi (.bam) 89.29 Gbp 62.32x 32.4 GiB
Arima 152.60 Gbp 106.51x 43.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.43 Gbp.
Last upload on 22 October 2024.
Assemblies
Individual 2 Haplotype 1 Assembly
Version assembly_cambridge from 17 October 2024
bLarCan2.hap1.asm.20241017.fasta.gz (307.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 11 10.21 Mbp 1 220.13 Mbp
20 29 6.86 Mbp 2 167.19 Mbp
30 52 5.59 Mbp 3 126.81 Mbp
40 80 4.43 Mbp 4 95.49 Mbp
50 117 3.49 Mbp 6 83.95 Mbp
60 163 2.74 Mbp 8 58.30 Mbp
70 223 2.03 Mbp 10 49.97 Mbp
80 310 1.24 Mbp 17 14.68 Mbp
90 523 255.00 Kbp 107 369.12 Kbp
100 0 0
0.919x 868 1.32 Gbp 386 1.32 Gbp
NG based on genome size 1.43 Gbp.
Individual 2 Haplotype 2 Assembly
Version assembly_cambridge from 17 October 2024
bLarCan2.hap2.asm.20241017.fasta.gz (311.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 11 10.69 Mbp 1 217.59 Mbp
20 29 7.25 Mbp 2 165.18 Mbp
30 50 6.10 Mbp 3 126.27 Mbp
40 77 4.80 Mbp 4 94.94 Mbp
50 111 3.73 Mbp 6 84.47 Mbp
60 154 3.00 Mbp 8 59.17 Mbp
70 209 2.29 Mbp 10 50.24 Mbp
80 285 1.51 Mbp 17 9.70 Mbp
90 414 0.79 Mbp 65 1.28 Mbp
100 0 0
0.972x 830 1.39 Gbp 376 1.39 Gbp
NG based on genome size 1.43 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 17 October 2024
bLarCan2.MT.20241017.fasta.gz (5.6 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.