Lissotriton vulgaris

common newt

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: aLisVul
  name: Lissotriton vulgaris
  taxon_id: 8324
  common_name: common newt
  order:
    name: Caudata
  family:
    name: Salamandridae
  individuals:
    - short_name: aLisVul1
      biosample_id: SAMEA110240861
      sex: female
  genome_size: 24650490000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) aLisVul1 886.00 Gbp 35.94x 434.7 GiB
Arima aLisVul1 913.07 Gbp 37.04x 280.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 24.65 Gbp.
Last upload on 2 December 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
aLisVul1 PacBio HiFi (.bam) 886.00 Gbp 35.94x 434.7 GiB
Arima 913.07 Gbp 37.04x 280.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 24.65 Gbp.
Last upload on 2 December 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_cambridge from 2 January 2024
aLisVul1.pri.asm.20240102.fasta.gz (6.6 GiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 118 16.70 Mbp 2 2.34 Gbp
20 291 12.40 Mbp 3 2.27 Gbp
30 514 9.94 Mbp 4 2.14 Gbp
40 789 8.14 Mbp 5 2.01 Gbp
50 1127 6.53 Mbp 6 1.85 Gbp
60 1556 5.04 Mbp 8 1.52 Gbp
70 2128 3.69 Mbp 9 1.22 Gbp
80 2946 2.44 Mbp 12 0.76 Gbp
90 4444 1.09 Mbp 506 1.22 Mbp
100 18459 15.30 Kbp 14462 15.60 Kbp
1.000x 19523 24.66 Gbp 15577 24.66 Gbp
NG based on genome size 24.65 Gbp.
Individual 1 Alternate Assembly
Version assembly_cambridge from 2 January 2024
aLisVul1.alt.asm.20240102.fasta.gz (5.5 GiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 623 2.73 Mbp 623 2.73 Mbp
20 1789 1.67 Mbp 1789 1.67 Mbp
30 3648 1.07 Mbp 3648 1.07 Mbp
40 6697 0.61 Mbp 6697 0.61 Mbp
50 12906 245.18 Kbp 12906 245.18 Kbp
60 33291 78.40 Kbp 33291 78.40 Kbp
70 76787 43.21 Kbp 76787 43.21 Kbp
80 152360 23.65 Kbp 152360 23.65 Kbp
90 0 0
100 0 0
0.827x 191193 20.40 Gbp 191193 20.40 Gbp
NG based on genome size 24.65 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 2 January 2024
aLisVul1.MT.20240102.fasta.gz (5.2 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.