Lutra lutra

European otter

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank mLutLut1: GCA_902655055.2 mLutLut1: GCA_902653095.1
ENA mLutLut1: GCA_902655055.2 mLutLut1: GCA_902653095.1
UCSC Genome Browser mLutLut1: GCA_902655055.2 mLutLut1: GCA_902653095.1

metadata.yaml (view) (edit on github)
species:
  short_name: mLutLut
  name: Lutra lutra
  taxon_id: 9657
  common_name: European otter
  order:
    name: Carnivora
  family:
    name: Mustelidae
  individuals:
    - short_name: mLutLut1
  genome_size:
  genome_size_method:
  project: [ vgp ]
(pixabay)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR mLutLut1 157.85 Gbp 64.73x 273.1 GiB
10x mLutLut1 260.97 Gbp 107.03x 165.4 GiB
Arima mLutLut1 86.60 Gbp 35.51x 49.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.44 Gbp.
Last upload on 4 June 2020.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mLutLut1 PacBio CLR 157.85 Gbp 64.73x 273.1 GiB
10x 260.97 Gbp 107.03x 165.4 GiB
Arima 86.60 Gbp 35.51x 49.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.44 Gbp.
Last upload on 4 June 2020.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 22 August 2019
mLutLut1.pri.cur.20190822.fasta.gz (709.2 MiB)

Quality: 69.6 errors/Mb (QV=41.57)

Contigs Scaffolds
NG LG Len LG Len
10 2 85.73 Mbp 1 210.65 Mbp
20 5 63.46 Mbp 2 201.32 Mbp
30 10 52.24 Mbp 3 197.71 Mbp
40 16 39.86 Mbp 4 165.81 Mbp
50 22 30.40 Mbp 6 149.00 Mbp
60 31 24.23 Mbp 8 144.09 Mbp
70 43 18.92 Mbp 10 108.79 Mbp
80 57 14.61 Mbp 12 96.45 Mbp
90 80 7.48 Mbp 14 89.08 Mbp
100 227 15.22 Kbp 42 15.22 Kbp
1.000x 228 2.44 Gbp 43 2.44 Gbp
NG based on genome size 2.44 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 22 August 2019
mLutLut1.alt.cur.20190822.fasta.gz (314.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 48 1.28 Mbp 48 1.28 Mbp
20 197 0.51 Mbp 197 0.51 Mbp
30 472 321.41 Kbp 472 321.41 Kbp
40 871 234.14 Kbp 871 234.14 Kbp
50 1411 174.90 Kbp 1411 174.90 Kbp
60 2120 133.15 Kbp 2120 133.15 Kbp
70 3053 100.96 Kbp 3053 100.96 Kbp
80 4285 76.83 Kbp 4285 76.83 Kbp
90 5908 57.86 Kbp 5908 57.86 Kbp
100 8505 338 bp 8505 338 bp
1.000x 8506 1.08 Gbp 8506 1.08 Gbp
NG based on genome size 2.44 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
mLutLut1.MT.20191003.fasta.gz (4.9 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.