Milvus milvus

red kite

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bMilMil
  name: Milvus milvus
  taxon_id: 43518
  common_name: red kite
  order:
    name: Accipitriformes
  family:
    name: Accipitridae
  individuals:
    - short_name: bMilMil1
      biosample_id: SAMEA115765510
      sex:
  genome_size: 1467000000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (subreads) bMilMil3 74.82 Gbp 51.00x 33.4 GiB
PacBio HiFi (.fq) bMilMil3 81.35 Gbp 55.45x 40.6 GiB
PacBio HiFi (.bam) bMilMil1 94.29 Gbp 64.27x 29.4 GiB
bMilMil3 5.19 Gbp 3.54x 3.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.47 Gbp.
Last upload on 9 September 2025.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bMilMil1 PacBio HiFi (.bam) 94.29 Gbp 64.27x 29.4 GiB
bMilMil3 PacBio HiFi (subreads) 74.82 Gbp 51.00x 33.4 GiB
PacBio HiFi (.fq) 81.35 Gbp 55.45x 40.6 GiB
PacBio HiFi (.bam) 5.19 Gbp 3.54x 3.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.47 Gbp.
Last upload on 9 September 2025.
Assemblies
Individual 3 Primary Assembly
Version assembly_vogelwarte from 17 November 2025
bMilMil3.pri.cur.20251117.fasta.gz (366.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 46.82 Mbp 2 85.65 Mbp
20 6 37.28 Mbp 4 76.23 Mbp
30 11 28.64 Mbp 7 47.72 Mbp
40 16 25.16 Mbp 10 44.63 Mbp
50 23 22.51 Mbp 13 42.11 Mbp
60 31 14.88 Mbp 17 33.80 Mbp
70 43 9.99 Mbp 22 29.57 Mbp
80 68 3.40 Mbp 27 23.86 Mbp
90 0 0
100 0 0
0.884x 347 1.30 Gbp 243 1.30 Gbp
NG based on genome size 1.47 Gbp.
Individual 3 Alternate Assembly
No assembly available.


Contigs Scaffolds
NG LG Len LG Len
10 - - - -
20 - - - -
30 - - - -
40 - - - -
50 - - - -
60 - - - -
70 - - - -
80 - - - -
90 - - - -
100 - - - -
0.000x - 0.0 Mbp - 0.0 Mbp
Individual 3 Haplotype 1 Assembly
Version assembly_vogelwarte from 17 November 2025
bMilMil3.hap1.cur.20251117.fasta.gz (302.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 20 4.81 Mbp 2 80.72 Mbp
20 60 2.84 Mbp 4 67.00 Mbp
30 123 1.93 Mbp 7 43.85 Mbp
40 217 1.25 Mbp 11 38.60 Mbp
50 357 0.87 Mbp 15 35.37 Mbp
60 569 0.56 Mbp 20 26.06 Mbp
70 924 305.50 Kbp 26 20.70 Mbp
80 2004 36.29 Kbp 473 42.11 Kbp
90 0 0
100 0 0
0.803x 2169 1.18 Gbp 632 1.18 Gbp
NG based on genome size 1.47 Gbp.
Individual 3 Haplotype 2 Assembly
Version assembly_vogelwarte from 17 November 2025
bMilMil3.hap2.cur.20251117.fasta.gz (275.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 20 5.41 Mbp 2 76.23 Mbp
20 55 3.41 Mbp 5 48.34 Mbp
30 111 2.01 Mbp 8 39.94 Mbp
40 209 1.13 Mbp 12 32.00 Mbp
50 379 0.68 Mbp 18 26.88 Mbp
60 655 404.90 Kbp 24 19.58 Mbp
70 1220 137.50 Kbp 74 373.28 Kbp
80 0 0
90 0 0
100 0 0
0.728x 1749 1.07 Gbp 429 1.07 Gbp
NG based on genome size 1.47 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.