Myodes glareolus

bank vole

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mMyoGla
  name: Myodes glareolus
  taxon_id: 447135
  common_name: bank vole
  order:
    name: Rodentia
  family:
    name: Cricetidae
  individuals:
    - short_name: mMyoGla1
      biosample_id: SAMEA7702027
      sex: female
    - short_name: mMyoGla2
      biosample_id: SAMEA7702028
      sex: male
  genome_size:
  genome_size_method:
  project: [ vgp ]
CC BY 2.0, Frank Vassen (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mMyoGla1 52.41 Gbp 20.27x 189.6 GiB
10x mMyoGla1 166.99 Gbp 64.60x 80.3 GiB
Arima mMyoGla2 524.29 Gbp 202.81x 245.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.59 Gbp.
Last upload on 3 May 2022.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mMyoGla1 PacBio HiFi (.bam) 52.41 Gbp 20.27x 189.6 GiB
10x 166.99 Gbp 64.60x 80.3 GiB
mMyoGla2 Arima 524.29 Gbp 202.81x 245.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.59 Gbp.
Last upload on 3 May 2022.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 5 March 2026
mMyoGla1.pri.cur.20260305.fasta.gz (726.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 6 38.31 Mbp 2 143.75 Mbp
20 15 27.14 Mbp 4 132.83 Mbp
30 25 22.40 Mbp 6 120.05 Mbp
40 38 17.59 Mbp 8 112.66 Mbp
50 54 14.62 Mbp 11 90.68 Mbp
60 74 12.01 Mbp 14 80.45 Mbp
70 98 9.33 Mbp 17 77.51 Mbp
80 132 6.35 Mbp 21 65.68 Mbp
90 185 3.75 Mbp 25 55.04 Mbp
100 470 4.00 Kbp 188 4.00 Kbp
1.000x 470 2.59 Gbp 188 2.59 Gbp
NG based on genome size 2.59 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 5 March 2026
mMyoGla1.alt.cur.20260305.fasta.gz (718.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 188 1.06 Mbp 2 140.03 Mbp
20 466 0.81 Mbp 4 134.64 Mbp
30 816 0.65 Mbp 6 118.98 Mbp
40 1250 0.53 Mbp 8 109.28 Mbp
50 1781 429.85 Kbp 11 89.77 Mbp
60 2443 346.37 Kbp 14 76.97 Mbp
70 3283 261.44 Kbp 17 71.20 Mbp
80 4435 182.46 Kbp 21 64.77 Mbp
90 6307 96.55 Kbp 25 49.78 Mbp
100 13377 167 bp 2101 2.90 Kbp
1.000x 13377 2.54 Gbp 2101 2.54 Gbp
NG based on genome size 2.59 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.