Myuchelys georgesi

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Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) rMyuGeo1 50.38 Gbp 25.44x 35.8 GiB
Arima rMyuGeo1 169.68 Gbp 85.69x 70.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.98 Gbp.
Last upload on 26 November 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
rMyuGeo1 PacBio HiFi (.fq) 50.38 Gbp 25.44x 35.8 GiB
Arima 169.68 Gbp 85.69x 70.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.98 Gbp.
Last upload on 26 November 2024.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 27 November 2024
rMyuGeo1.pri.cur.20241127.fasta.gz (535.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 113.04 Mbp 1 311.45 Mbp
20 4 99.67 Mbp 2 245.38 Mbp
30 6 82.31 Mbp 3 200.99 Mbp
40 9 72.73 Mbp 4 148.81 Mbp
50 12 56.18 Mbp 5 123.45 Mbp
60 16 48.44 Mbp 7 113.64 Mbp
70 20 34.60 Mbp 9 101.33 Mbp
80 28 19.63 Mbp 11 56.18 Mbp
90 41 12.41 Mbp 16 30.20 Mbp
100 186 4.00 Kbp 109 4.00 Kbp
1.000x 186 1.98 Gbp 109 1.98 Gbp
NG based on genome size 1.98 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 26 November 2024
rMyuGeo1.alt.cur.20241126.fasta.gz (0.1 KiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 0 0
20 0 0
30 0 0
40 0 0
50 0 0
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.000x 0 0
NG based on genome size 1.98 Gbp.
Assembly Metadata
assembly_UniOfSydney/rMyuGeo1.yaml (view)
species: Myuchelys georgesi
specimen: rMyuGeo1
projects: 
  - Threatened Species Initiative (TSI)
assembled_by_group: The University of Sydney
data_location: S3
release_to: S3
pri: s3://genomeark/species/Myuchelys_georgesi/rMyuGeo1/assembly_genbank/GCA_040894355.1_rMyuGeo1.pri.20230808.fasta.gz
pretext: s3://genomeark/species/Myuchelys_georgesi/rMyuGeo1/assembly_UniofSydney/evaluation/pri/pretext/rMyuGeo1_QC.pretext
kmer_spectra_img: s3://genomeark/species/Myuchelys_georgesi/rMyuGeo1/assembly_UniofSydney/evaluation/merqury/rMyuGeo1_png/
pacbio_read_dir: s3://genomeark/species/Myuchelys_georgesi/rMyuGeo1/genomic_data/pacbio_hifi/
pacbio_read_type: hifi
hic_read_dir: s3://genomeark/species/Myuchelys_georgesi/rMyuGeo1/genomic_data/arima/
pipeline: 
  - hifiasm (0.16)
  - yahs (1.1)
notes: This was a Hifiasm-HiC assembly of rMyuGeo1, assembled by the University of Sydney and present on NCBI as GCA_040894355.1. It is a primary asembly only. Arima HiC 2.0 single index kit for the HiC. This is a VGP Phase 1 species we are submitting for curation.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.