Notothenia rossii

marbled rockcod

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fNotRos5: GCA_949606895.1 fNotRos5: GCA_949606865.1
ENA fNotRos5: GCA_949606895.1 fNotRos5: GCA_949606865.1
UCSC Genome Browser fNotRos5: GCA_949606895.1 fNotRos5: GCA_949606865.1

metadata.yaml (view) (edit on github)
species:
  short_name: fNotRos
  name: Notothenia rossii
  taxon_id: 101497
  common_name: marbled rockcod
  order:
    name: Perciformes
  family:
    name: Nototheniidae
  individuals:
    - short_name: fNotRos5
      biosample_id: SAMEA12815441
      sex:
  genome_size: 1234725000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fNotRos5 27.22 Gbp 22.05x 93.7 GiB
Arima fNotRos5 148.53 Gbp 120.29x 45.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.23 Gbp.
Last upload on 8 February 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fNotRos5 PacBio HiFi (.bam) 27.22 Gbp 22.05x 93.7 GiB
Arima 148.53 Gbp 120.29x 45.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.23 Gbp.
Last upload on 8 February 2023.
Assemblies
Individual 5 Primary Assembly
Version assembly_curated from 8 March 2023
fNotRos5.pri.cur.20230308.fasta.gz (284.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 85 1.04 Mbp 1 96.85 Mbp
20 232 0.70 Mbp 2 96.53 Mbp
30 435 0.54 Mbp 3 96.43 Mbp
40 700 406.00 Kbp 5 89.68 Mbp
50 1050 305.86 Kbp 6 85.89 Mbp
60 1520 222.29 Kbp 8 82.49 Mbp
70 2206 145.33 Kbp 9 65.36 Mbp
80 3418 66.19 Kbp 18 1.60 Mbp
90 0 0
100 0 0
0.844x 5100 1.04 Gbp 943 1.04 Gbp
NG based on genome size 1.23 Gbp.
Individual 5 Alternate Assembly
Version assembly_curated from 8 March 2023
fNotRos5.alt.cur.20230308.fasta.gz (274.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 146 0.55 Mbp 146 0.55 Mbp
20 427 365.16 Kbp 427 365.16 Kbp
30 817 275.38 Kbp 817 275.38 Kbp
40 1341 203.00 Kbp 1341 203.00 Kbp
50 2049 149.19 Kbp 2049 149.19 Kbp
60 3038 103.61 Kbp 3038 103.61 Kbp
70 4580 61.33 Kbp 4580 61.33 Kbp
80 7743 22.77 Kbp 7743 22.77 Kbp
90 0 0
100 0 0
0.814x 8737 1.01 Gbp 8737 1.01 Gbp
NG based on genome size 1.23 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.