Oligoryzomys nigripes

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Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) mOliNig2 180.74 Gbp N/A 82.7 GiB
PacBio HiFi (.bam) mOliNig2 179.69 Gbp N/A 584.1 GiB
Arima mOliNig2 364.96 Gbp N/A 188.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 28 March 2025.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mOliNig2 PacBio HiFi (.fq) 180.74 Gbp N/A 82.7 GiB
PacBio HiFi (.bam) 179.69 Gbp N/A 584.1 GiB
Arima 364.96 Gbp N/A 188.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 28 March 2025.
Assemblies
Individual 2 Haplotype 1 Assembly
Version assembly_vgp_HiC_2.0 from 3 May 2025
mOliNig2.HiC.hap1.20250503.fasta.gz (693.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 76.91 Mbp 2 162.37 Mbp
20 7 60.63 Mbp 4 134.67 Mbp
30 12 50.78 Mbp 6 115.59 Mbp
40 17 36.93 Mbp 8 98.84 Mbp
50 26 26.61 Mbp 11 79.64 Mbp
60 38 19.88 Mbp 14 73.79 Mbp
70 53 14.60 Mbp 18 68.35 Mbp
80 78 8.43 Mbp 22 60.85 Mbp
90 124 4.07 Mbp 28 40.56 Mbp
100 509 11.64 Kbp 215 11.64 Kbp
1.000x 509 2.63 Gbp 215 2.63 Gbp
NG based on genome size .
Individual 2 Haplotype 2 Assembly
Version assembly_vgp_HiC_2.0 from 3 May 2025
mOliNig2.HiC.hap2.20250503.fasta.gz (659.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 4 64.06 Mbp 2 204.01 Mbp
20 8 58.67 Mbp 3 161.63 Mbp
30 12 49.20 Mbp 5 129.99 Mbp
40 18 35.64 Mbp 7 113.82 Mbp
50 27 26.74 Mbp 9 95.50 Mbp
60 37 22.32 Mbp 12 78.46 Mbp
70 51 14.77 Mbp 15 73.51 Mbp
80 71 11.26 Mbp 19 60.96 Mbp
90 102 5.01 Mbp 23 49.95 Mbp
100 384 18.91 Kbp 116 18.91 Kbp
1.000x 384 2.49 Gbp 116 2.49 Gbp
NG based on genome size .
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.