Osmerus eperlanus

European smelt

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fOsmEpe
  name: Osmerus eperlanus
  taxon_id: 29151
  common_name: European smelt
  order:
    name: Osmeriformes
  family:
    name: Osmeridae
  individuals:
    - short_name: fOsmEpe2
      biosample_id: SAMEA14448128
      sex:
  genome_size: 606360000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fOsmEpe2 19.98 Gbp 32.95x 69.3 GiB
Arima fOsmEpe2 178.43 Gbp 294.26x 56.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.61 Gbp.
Last upload on 13 June 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fOsmEpe2 PacBio HiFi (.bam) 19.98 Gbp 32.95x 69.3 GiB
Arima 178.43 Gbp 294.26x 56.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.61 Gbp.
Last upload on 13 June 2023.
Assemblies
Individual 2 Primary Assembly
Version assembly_curated from 24 November 2023
fOsmEpe2.pri.cur.20231124.fasta.gz (139.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 15 2.43 Mbp 3 24.23 Mbp
20 56 1.03 Mbp 5 23.61 Mbp
30 128 0.66 Mbp 8 20.87 Mbp
40 243 423.65 Kbp 11 18.66 Mbp
50 422 278.67 Kbp 15 17.07 Mbp
60 706 169.84 Kbp 18 15.39 Mbp
70 1194 90.36 Kbp 22 13.45 Mbp
80 2263 34.69 Kbp 28 8.36 Mbp
90 0 0
100 0 0
0.838x 3470 0.51 Gbp 1008 0.51 Gbp
NG based on genome size 0.61 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 24 November 2023
fOsmEpe2.alt.cur.20231124.fasta.gz (117.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 101 364.95 Kbp 101 364.95 Kbp
20 333 202.69 Kbp 333 202.69 Kbp
30 708 133.09 Kbp 708 133.09 Kbp
40 1275 87.20 Kbp 1274 87.24 Kbp
50 2136 57.04 Kbp 2135 57.18 Kbp
60 3510 34.56 Kbp 3507 34.58 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.694x 5998 420.61 Mbp 5995 420.61 Mbp
NG based on genome size 0.61 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 1 July 2023
fOsmEpe2.MT.20230701.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.