Pagrus pagrus

common seabream

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fPagPag
  name: Pagrus pagrus
  taxon_id: 8173
  common_name: common seabream
  order:
    name: Perciformes
  family:
    name: Sparidae
  individuals:
    - short_name: fPagPag1
      biosample_id: SAMEA110450108
      sex:
  genome_size: 782400000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fPagPag1 30.79 Gbp 39.35x 10.4 GiB
Arima fPagPag1 362.11 Gbp 462.82x 91.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.78 Gbp.
Last upload on 10 August 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fPagPag1 PacBio HiFi (.bam) 30.79 Gbp 39.35x 10.4 GiB
Arima 362.11 Gbp 462.82x 91.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.78 Gbp.
Last upload on 10 August 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 21 March 2025
fPagPag1.hap1.cur.20250321.fasta.gz (227.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 10 6.12 Mbp 3 36.89 Mbp
20 25 4.56 Mbp 5 36.05 Mbp
30 43 3.89 Mbp 7 35.47 Mbp
40 66 3.22 Mbp 9 34.73 Mbp
50 92 2.77 Mbp 11 33.89 Mbp
60 124 2.22 Mbp 14 31.52 Mbp
70 164 1.67 Mbp 16 30.10 Mbp
80 220 1.14 Mbp 19 29.20 Mbp
90 308 0.63 Mbp 22 25.19 Mbp
100 524 200.76 Kbp 60 357.00 Kbp
1.055x 1112 0.83 Gbp 576 0.83 Gbp
NG based on genome size 0.78 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 21 March 2025
fPagPag1.hap2.cur.20250321.fasta.gz (223.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 10 7.01 Mbp 3 36.84 Mbp
20 24 4.74 Mbp 5 35.79 Mbp
30 43 3.74 Mbp 7 34.69 Mbp
40 66 3.21 Mbp 9 34.64 Mbp
50 93 2.49 Mbp 11 34.57 Mbp
60 127 2.13 Mbp 14 31.64 Mbp
70 170 1.59 Mbp 16 29.96 Mbp
80 228 1.15 Mbp 19 28.90 Mbp
90 317 0.61 Mbp 22 25.37 Mbp
100 640 62.55 Kbp 118 80.00 Kbp
1.005x 784 0.79 Gbp 249 0.79 Gbp
NG based on genome size 0.78 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 5 September 2024
fPagPag1.MT.20240905.fasta.gz (5.1 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.