Pagrus pagrus

common seabream

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fPagPag
  name: Pagrus pagrus
  taxon_id: 8173
  common_name: common seabream
  order:
    name: Perciformes
  family:
    name: Sparidae
  individuals:
    - short_name: fPagPag1
      biosample_id: SAMEA110450108
      sex:
  genome_size: 782400000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fPagPag1 30.79 Gbp 39.35x 10.4 GiB
Arima fPagPag1 362.11 Gbp 462.82x 91.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.78 Gbp.
Last upload on 10 August 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fPagPag1 PacBio HiFi (.bam) 30.79 Gbp 39.35x 10.4 GiB
Arima 362.11 Gbp 462.82x 91.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.78 Gbp.
Last upload on 10 August 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 5 September 2024
fPagPag1.hap1.asm.20240905.fasta.gz (204.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 9 6.98 Mbp 3 36.84 Mbp
20 23 4.73 Mbp 5 36.05 Mbp
30 41 3.91 Mbp 7 35.28 Mbp
40 63 3.26 Mbp 9 34.73 Mbp
50 89 2.77 Mbp 11 33.89 Mbp
60 121 2.20 Mbp 14 31.52 Mbp
70 162 1.65 Mbp 16 29.68 Mbp
80 217 1.19 Mbp 19 28.85 Mbp
90 304 0.62 Mbp 22 25.03 Mbp
100 526 194.00 Kbp 67 315.03 Kbp
1.053x 1112 0.82 Gbp 583 0.82 Gbp
NG based on genome size 0.78 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 5 September 2024
fPagPag1.hap2.asm.20240905.fasta.gz (201.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 11 5.84 Mbp 3 36.91 Mbp
20 26 4.63 Mbp 5 35.92 Mbp
30 46 3.67 Mbp 7 34.69 Mbp
40 68 3.17 Mbp 9 34.64 Mbp
50 96 2.49 Mbp 11 34.57 Mbp
60 130 2.13 Mbp 14 31.64 Mbp
70 173 1.61 Mbp 16 30.10 Mbp
80 230 1.14 Mbp 19 28.90 Mbp
90 321 0.61 Mbp 22 25.37 Mbp
100 610 77.77 Kbp 92 112.07 Kbp
1.009x 791 0.79 Gbp 250 0.79 Gbp
NG based on genome size 0.78 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 5 September 2024
fPagPag1.MT.20240905.fasta.gz (5.1 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.