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Raw Data by Technology
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 8 June 2024.
Coverage based on genome size .
Last upload on 8 June 2024.
Raw Data by Individual
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 8 June 2024.
Coverage based on genome size .
Last upload on 8 June 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 5 January 2024
bPatFas1.hap1.cur.20240105.fasta.gz (293.1 MiB)
Quality: not computed
Version assembly_curated from 5 January 2024
bPatFas1.hap1.cur.20240105.fasta.gz (293.1 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 3 | 39.76 Mbp | 1 | 214.99 Mbp |
20 | 6 | 30.18 Mbp | 2 | 160.85 Mbp |
30 | 11 | 22.52 Mbp | 2 | 160.85 Mbp |
40 | 17 | 20.64 Mbp | 3 | 123.62 Mbp |
50 | 23 | 18.04 Mbp | 5 | 70.09 Mbp |
60 | 30 | 14.38 Mbp | 7 | 44.38 Mbp |
70 | 40 | 10.08 Mbp | 10 | 28.34 Mbp |
80 | 55 | 5.70 Mbp | 16 | 17.80 Mbp |
90 | 88 | 2.38 Mbp | 28 | 5.64 Mbp |
100 | 672 | 588 bp | 528 | 15.65 Kbp |
1.000x | 672 | 1.19 Gbp | 528 | 1.20 Gbp |
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 5 January 2024
bPatFas1.hap2.cur.20240105.fasta.gz (337.6 MiB)
Quality: not computed
Version assembly_curated from 5 January 2024
bPatFas1.hap2.cur.20240105.fasta.gz (337.6 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 4 | 42.88 Mbp | 1 | 215.60 Mbp |
20 | 7 | 35.99 Mbp | 2 | 170.13 Mbp |
30 | 13 | 23.05 Mbp | 3 | 126.66 Mbp |
40 | 19 | 21.46 Mbp | 4 | 85.91 Mbp |
50 | 27 | 17.01 Mbp | 6 | 71.51 Mbp |
60 | 36 | 12.58 Mbp | 9 | 42.88 Mbp |
70 | 51 | 7.84 Mbp | 13 | 25.31 Mbp |
80 | 76 | 3.84 Mbp | 21 | 14.07 Mbp |
90 | 134 | 1.41 Mbp | 42 | 2.81 Mbp |
100 | 682 | 6.07 Kbp | 464 | 12.93 Kbp |
1.000x | 682 | 1.40 Gbp | 464 | 1.41 Gbp |
NG based on genome size .
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 5 January 2024
bPatFas1.MT.20240105.fasta.gz (5.3 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 5 January 2024
bPatFas1.MT.20240105.fasta.gz (5.3 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.