Patagioenas fasciata

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Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (subreads) bPatFas1 1453.52 Gbp N/A 2.5 TiB
PacBio HiFi (.fq) bPatFas1 79.48 Gbp N/A 65.8 GiB
PacBio HiFi (.bam) bPatFas1 246.54 Gbp N/A 869.1 GiB
Arima bPatFas1 67.07 Gbp N/A 35.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 8 June 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bPatFas1 PacBio HiFi (subreads) 1453.52 Gbp N/A 2.5 TiB
PacBio HiFi (.fq) 79.48 Gbp N/A 65.8 GiB
PacBio HiFi (.bam) 246.54 Gbp N/A 869.1 GiB
Arima 67.07 Gbp N/A 35.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 8 June 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 23 December 2024
bPatFas1.hap1.cur.20241223.fasta.gz (382.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 97.46 Mbp 1 216.01 Mbp
20 3 81.54 Mbp 2 170.07 Mbp
30 5 66.77 Mbp 3 126.43 Mbp
40 7 61.78 Mbp 4 85.90 Mbp
50 10 48.25 Mbp 6 71.67 Mbp
60 15 23.56 Mbp 8 56.11 Mbp
70 22 17.74 Mbp 12 29.12 Mbp
80 33 8.28 Mbp 18 17.63 Mbp
90 72 1.75 Mbp 34 4.22 Mbp
100 497 1 bp 360 13.35 Kbp
1.000x 497 1.45 Gbp 360 1.45 Gbp
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 23 December 2024
bPatFas1.hap2.cur.20241223.fasta.gz (327.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 1 132.38 Mbp 1 215.62 Mbp
20 3 101.02 Mbp 2 166.69 Mbp
30 4 80.86 Mbp 2 166.69 Mbp
40 5 65.88 Mbp 3 123.86 Mbp
50 7 63.45 Mbp 5 70.86 Mbp
60 10 38.38 Mbp 7 49.34 Mbp
70 14 23.46 Mbp 10 29.62 Mbp
80 20 16.01 Mbp 15 19.00 Mbp
90 34 4.98 Mbp 24 8.04 Mbp
100 505 1 bp 441 5.72 Kbp
1.000x 505 1.19 Gbp 441 1.21 Gbp
NG based on genome size .
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 December 2024
bPatFas1.MT.20241203.fasta.gz (5.4 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.