Pholidichthys leucotaenia

Convict blenny

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fPhoLeu1: GCA_020510985.1 fPhoLeu1: GCA_020510965.1
ENA fPhoLeu1: GCA_020510985.1 fPhoLeu1: GCA_020510965.1
UCSC Genome Browser fPhoLeu1: GCA_020510985.1 fPhoLeu1: GCA_020510965.1

metadata.yaml (view) (edit on github)
species:
  short_name: fPhoLeu
  name: Pholidichthys leucotaenia
  taxon_id: 390368
  common_name: Convict blenny 
  order:
    name: Cichliformes
  family:
    name: Pholidichthyidae
  individuals:
    - short_name: fPhoLeu1
  project: [ vgp ]
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR fPhoLeu1 592.48 Gbp 98.22x 1.1 TiB
10x fPhoLeu1 360.30 Gbp 59.73x 183.1 GiB
Bionano fPhoLeu1 N/A 112.08x 862.1 MiB
Arima fPhoLeu1 350.68 Gbp 58.13x 227.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 6.03 Gbp.
Last upload on 17 September 2020.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fPhoLeu1 PacBio CLR 592.48 Gbp 98.22x 1.1 TiB
10x 360.30 Gbp 59.73x 183.1 GiB
Bionano N/A 112.08x 862.1 MiB
Arima 350.68 Gbp 58.13x 227.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 6.03 Gbp.
Last upload on 17 September 2020.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 16 July 2021
fPhoLeu1.pri.cur.20210716.fasta.gz (1.7 GiB)

Quality: 73.3 errors/Mb (QV=41.35)

Contigs Scaffolds
NG LG Len LG Len
10 31 14.79 Mbp 1 492.90 Mbp
20 79 11.01 Mbp 2 492.01 Mbp
30 139 9.16 Mbp 3 481.60 Mbp
40 212 7.38 Mbp 4 467.51 Mbp
50 303 5.87 Mbp 6 435.63 Mbp
60 415 4.78 Mbp 7 429.46 Mbp
70 560 3.58 Mbp 9 358.93 Mbp
80 758 2.56 Mbp 10 333.31 Mbp
90 1067 1.41 Mbp 12 306.32 Mbp
100 3091 55 bp 511 766 bp
1.000x 3092 5.98 Gbp 512 6.03 Gbp
NG based on genome size 6.03 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 16 July 2021
fPhoLeu1.alt.cur.20210716.fasta.gz (545.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 345 402.64 Kbp 338 407.13 Kbp
20 894 292.31 Kbp 881 295.16 Kbp
30 1627 223.33 Kbp 1607 225.41 Kbp
40 2577 173.94 Kbp 2548 175.64 Kbp
50 3800 134.82 Kbp 3760 136.10 Kbp
60 5378 103.86 Kbp 5325 104.65 Kbp
70 7466 77.06 Kbp 7396 77.67 Kbp
80 10324 55.33 Kbp 10232 55.73 Kbp
90 14419 37.83 Kbp 14306 37.98 Kbp
100 21560 203 bp 21416 203 bp
1.000x 21561 1.87 Gbp 21417 1.87 Gbp
NG based on genome size 6.03 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.