Pholis gunnellus

rock gunnel

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fPhoGun1: GCA_910591455.2 fPhoGun1: GCA_910591705.2
ENA fPhoGun1: GCA_910591455.2 fPhoGun1: GCA_910591705.2
UCSC Genome Browser fPhoGun1: GCA_910591455.2 fPhoGun1: GCA_910591705.2

metadata.yaml (view) (edit on github)
species:
  short_name: fPhoGun
  name: Pholis gunnellus
  taxon_id: 56726
  common_name: rock gunnel
  order:
    name: Perciformes
  family:
    name: Pholidae
  individuals:
    - short_name: fPhoGun1
      biosample_id: SAMEA7522838
      sex:
  genome_size:
  genome_size_method:
  project: [ vgp ]
CC BY-SA 4.0 Ecomare/Sytske Dijksen (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fPhoGun1 40.98 Gbp 69.61x 33.6 GiB
10x fPhoGun1 64.42 Gbp 109.43x 37.8 GiB
Arima fPhoGun1 218.70 Gbp 371.49x 102.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.59 Gbp.
Last upload on 8 February 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fPhoGun1 PacBio HiFi (.bam) 40.98 Gbp 69.61x 33.6 GiB
10x 64.42 Gbp 109.43x 37.8 GiB
Arima 218.70 Gbp 371.49x 102.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.59 Gbp.
Last upload on 8 February 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 20 October 2021
fPhoGun1.pri.cur.20211020.fasta.gz (169.6 MiB)

Quality: 7.3 errors/Mb (QV=51.36)

Contigs Scaffolds
NG LG Len LG Len
10 4 9.81 Mbp 1 29.66 Mbp
20 13 6.23 Mbp 3 29.15 Mbp
30 23 5.20 Mbp 5 28.16 Mbp
40 35 4.40 Mbp 8 27.10 Mbp
50 50 3.52 Mbp 10 25.36 Mbp
60 70 2.61 Mbp 12 25.06 Mbp
70 97 1.84 Mbp 15 22.52 Mbp
80 136 1.18 Mbp 17 21.87 Mbp
90 207 0.57 Mbp 20 20.23 Mbp
100 518 10.16 Kbp 100 11.20 Kbp
1.000x 519 0.59 Gbp 101 0.59 Gbp
NG based on genome size 0.59 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 20 October 2021
fPhoGun1.alt.cur.20211020.fasta.gz (170.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 25 1.88 Mbp 25 1.88 Mbp
20 64 1.32 Mbp 64 1.32 Mbp
30 113 1.09 Mbp 113 1.09 Mbp
40 173 0.87 Mbp 173 0.87 Mbp
50 251 0.64 Mbp 251 0.64 Mbp
60 359 472.34 Kbp 359 472.34 Kbp
70 504 348.01 Kbp 504 348.01 Kbp
80 704 239.24 Kbp 704 239.24 Kbp
90 1033 131.71 Kbp 1033 131.71 Kbp
100 2165 3.72 Kbp 2164 3.72 Kbp
1.000x 2166 0.59 Gbp 2165 0.59 Gbp
NG based on genome size 0.59 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.