Pipistrellus pipistrellus
common pipistrelle
Included in the BAT1K and VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | mPipPip1: GCA_903992545.1 | mPipPip1: GCA_903992515.1 |
ENA | mPipPip1: GCA_903992545.1 | mPipPip1: GCA_903992515.1 |
UCSC Genome Browser | mPipPip1: GCA_903992545.1 | mPipPip1: GCA_903992515.1 |
metadata.yaml (view) (edit on github) |
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CC BY-SA 2.0, Gilles San Martin (flickr)
Raw Data by Technology
Bases and Coverage are approximate.
Coverage based on genome size 1.76 Gbp.
Last upload on 9 February 2023.
Coverage based on genome size 1.76 Gbp.
Last upload on 9 February 2023.
Raw Data by Individual
Bases and Coverage are approximate.
Coverage based on genome size 1.76 Gbp.
Last upload on 9 February 2023.
Coverage based on genome size 1.76 Gbp.
Last upload on 9 February 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 24 July 2020
mPipPip1.pri.cur.20200724.fasta.gz (512.2 MiB)
Quality: 137.5 errors/Mb (QV=38.62)
Version assembly_curated from 24 July 2020
mPipPip1.pri.cur.20200724.fasta.gz (512.2 MiB)
Quality: 137.5 errors/Mb (QV=38.62)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 10 | 13.03 Mbp | 0 | 203.62 Mbp |
20 | 25 | 9.74 Mbp | 1 | 194.57 Mbp |
30 | 45 | 7.61 Mbp | 2 | 188.94 Mbp |
40 | 72 | 5.66 Mbp | 4 | 100.18 Mbp |
50 | 107 | 4.45 Mbp | 5 | 94.93 Mbp |
60 | 158 | 2.93 Mbp | 8 | 83.52 Mbp |
70 | 232 | 1.98 Mbp | 10 | 71.50 Mbp |
80 | 343 | 1.22 Mbp | 13 | 53.28 Mbp |
90 | 569 | 498.29 Kbp | 16 | 46.23 Mbp |
100 | 1868 | 2.62 Kbp | 322 | 11.95 Kbp |
1.000x | 1869 | 1.76 Gbp | 323 | 1.76 Gbp |
NG based on genome size 1.76 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 24 July 2020
mPipPip1.alt.cur.20200724.fasta.gz (459.9 MiB)
Quality: not computed
Version assembly_curated from 24 July 2020
mPipPip1.alt.cur.20200724.fasta.gz (459.9 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 175 | 0.68 Mbp | 175 | 0.68 Mbp |
20 | 453 | 485.01 Kbp | 453 | 485.14 Kbp |
30 | 831 | 365.80 Kbp | 830 | 366.29 Kbp |
40 | 1315 | 291.29 Kbp | 1314 | 291.57 Kbp |
50 | 1928 | 229.98 Kbp | 1927 | 230.23 Kbp |
60 | 2701 | 183.12 Kbp | 2699 | 183.17 Kbp |
70 | 3678 | 143.59 Kbp | 3676 | 143.67 Kbp |
80 | 4939 | 108.99 Kbp | 4936 | 109.01 Kbp |
90 | 6684 | 73.49 Kbp | 6680 | 73.56 Kbp |
100 | 10458 | 392 bp | 10446 | 392 bp |
1.000x | 10459 | 1.58 Gbp | 10447 | 1.58 Gbp |
NG based on genome size 1.76 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
mPipPip1.MT.20191003.fasta.gz (4.9 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 3 October 2019
mPipPip1.MT.20191003.fasta.gz (4.9 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.