Podarcis melisellensis

Dalmatian wall Lizard

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: rPodMel
  name: Podarcis melisellensis
  taxon_id: 65482
  common_name: Dalmatian wall Lizard
  order:
    name: Squamata
  family:
    name: Lacertidae
  individuals:
    - short_name: rPodMel1
      biosample_id: SAMEA115336775
      sex: female
  genome_size: 1931550000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) rPodMel1 58.58 Gbp 30.33x 19.4 GiB
Arima rPodMel1 357.80 Gbp 185.24x 103.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.93 Gbp.
Last upload on 14 June 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
rPodMel1 PacBio HiFi (.bam) 58.58 Gbp 30.33x 19.4 GiB
Arima 357.80 Gbp 185.24x 103.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.93 Gbp.
Last upload on 14 June 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 17 June 2024
rPodMel1.hap1.asm.20240617.fasta.gz (436.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 21 7.40 Mbp 2 125.27 Mbp
20 51 5.62 Mbp 4 104.56 Mbp
30 92 4.06 Mbp 5 102.05 Mbp
40 147 3.07 Mbp 7 92.56 Mbp
50 219 2.36 Mbp 10 75.99 Mbp
60 318 1.60 Mbp 13 56.24 Mbp
70 472 0.93 Mbp 16 45.01 Mbp
80 907 137.82 Kbp 170 180.46 Kbp
90 0 0
100 0 0
0.810x 1192 1.56 Gbp 428 1.56 Gbp
NG based on genome size 1.93 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 17 June 2024
rPodMel1.hap2.asm.20240617.fasta.gz (412.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 21 7.65 Mbp 2 123.94 Mbp
20 51 5.35 Mbp 4 104.46 Mbp
30 94 3.65 Mbp 5 103.24 Mbp
40 154 2.87 Mbp 7 92.09 Mbp
50 234 2.01 Mbp 10 76.35 Mbp
60 351 1.33 Mbp 13 56.11 Mbp
70 556 0.64 Mbp 17 40.74 Mbp
80 0 0
90 0 0
100 0 0
0.750x 1009 1.45 Gbp 250 1.45 Gbp
NG based on genome size 1.93 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 17 June 2024
rPodMel1.MT.20240617.fasta.gz (5.5 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.