Pteronotus mesoamericanus

Mesoamerican mustached bat

Included in the VGP and BAT1K.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  name: Pteronotus mesoamericanus
  short_name: mPteMes
  taxon_id: 1884717
  common_name: Mesoamerican mustached bat
  order:
    name: Chiroptera
  family:
    name: Mormoopidae
  individuals:
  - ''
  genome_size: 2591700000
  genome_size_method: GoaT
  project: [ vgp , bat1k ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) mPteMes1 138.71 Gbp 53.52x 102.2 GiB
PacBio HiFi (.bam) mPteMes1 139.16 Gbp 53.70x 478.4 GiB
Arima mPteMes1 193.36 Gbp 74.61x 107.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.59 Gbp.
Last upload on 5 March 2025.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mPteMes1 PacBio HiFi (.fq) 138.71 Gbp 53.52x 102.2 GiB
PacBio HiFi (.bam) 139.16 Gbp 53.70x 478.4 GiB
Arima 193.36 Gbp 74.61x 107.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.59 Gbp.
Last upload on 5 March 2025.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 17 March 2026
mPteMes1.pri.cur.20260317.fasta.gz (581.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 103.42 Mbp 2 205.07 Mbp
20 5 92.66 Mbp 3 204.98 Mbp
30 8 87.03 Mbp 4 198.14 Mbp
40 11 70.90 Mbp 6 181.92 Mbp
50 16 46.79 Mbp 7 139.30 Mbp
60 23 35.74 Mbp 9 105.97 Mbp
70 32 22.56 Mbp 12 59.18 Mbp
80 51 6.10 Mbp 18 30.68 Mbp
90 0 0
100 0 0
0.825x 87 2.14 Gbp 27 2.14 Gbp
NG based on genome size 2.59 Gbp.
Individual 1 Alternate Assembly
No assembly available.


Contigs Scaffolds
NG LG Len LG Len
10 - - - -
20 - - - -
30 - - - -
40 - - - -
50 - - - -
60 - - - -
70 - - - -
80 - - - -
90 - - - -
100 - - - -
0.000x - 0.0 Mbp - 0.0 Mbp
Assembly Metadata
assembly_vgp_HiC_2.0/mPteMes1.yml (view)
species: Pteronotus mesoamericanus
specimen: mPteMes1
projects: 
  - vgp
  - bat1k
assembled_by_group: Rockefeller
data_location: S3
release_to: S3
primary: s3://genomeark/species/Pteronotus_mesoamericanus/mPteMes1/assembly_vgp_HiC_2.0/mPteMes1.HiC.pri.20260227.fasta.gz
pretext: s3://genomeark/species/Pteronotus_mesoamericanus/mPteMes1/assembly_vgp_HiC_2.0/evaluation/pri/pretext/s2/mPteMes1_pri__s2_heatmap.pretext
kmer_spectra_img: s3://genomeark/species/Pteronotus_mesoamericanus/mPteMes1/assembly_vgp_HiC_2.0/evaluation/merqury/p/mPteMes1_png/
pacbio_read_dir: s3://genomeark/species/Pteronotus_mesoamericanus/mPteMes1/genomic_data/pacbio_hifi/
pacbio_read_type: hifi
hic_read_dir: s3://genomeark/species/Pteronotus_mesoamericanus/mPteMes1/genomic_data/arima/
pipeline: 
  - hifiasm (0.19.8+galaxy1)
  - yahs (1.2a.2+galaxy1)
  - purge_dups (1.2.6+galaxy0)
notes: This was a Hifiasm assembly of mPteMes1. Only the primary haplotype was assembled due to a sparse Hi-C map.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.