Raja microocellata

small-eyed ray

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: sRajMic
  name: Raja microocellata
  taxon_id: 223863
  common_name: small-eyed ray
  order:
    name: Rajiformes
  family:
    name: Rajidae
  individuals:
    - short_name: sRajMic1
      biosample_id: SAMEA110450104
      sex: female
  genome_size: 3423000000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) sRajMic1 75.92 Gbp 22.18x 195.2 GiB
Arima sRajMic1 387.88 Gbp 113.31x 118.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.42 Gbp.
Last upload on 13 January 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
sRajMic1 PacBio HiFi (.bam) 75.92 Gbp 22.18x 195.2 GiB
Arima 387.88 Gbp 113.31x 118.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.42 Gbp.
Last upload on 13 January 2024.
Assemblies
Individual 1 Primary Assembly
Version assembly_cambridge from 15 January 2024
sRajMic1.pri.asm.20240115.fasta.gz (765.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 40 6.53 Mbp 2 177.43 Mbp
20 104 4.62 Mbp 5 132.00 Mbp
30 191 3.31 Mbp 7 124.84 Mbp
40 312 2.46 Mbp 10 115.94 Mbp
50 477 1.74 Mbp 14 92.42 Mbp
60 726 1.10 Mbp 19 47.07 Mbp
70 1184 480.67 Kbp 29 20.29 Mbp
80 0 0
90 0 0
100 0 0
0.776x 3026 2.66 Gbp 686 2.66 Gbp
NG based on genome size 3.42 Gbp.
Individual 1 Alternate Assembly
Version assembly_cambridge from 15 January 2024
sRajMic1.alt.asm.20240115.fasta.gz (839.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 228 1.06 Mbp 228 1.06 Mbp
20 625 0.73 Mbp 625 0.73 Mbp
30 1173 0.54 Mbp 1173 0.54 Mbp
40 1900 409.58 Kbp 1900 409.58 Kbp
50 2882 301.48 Kbp 2882 301.48 Kbp
60 4244 206.93 Kbp 4244 206.93 Kbp
70 6361 125.66 Kbp 6361 125.66 Kbp
80 10369 56.25 Kbp 10369 56.25 Kbp
90 21012 16.46 Kbp 21012 16.46 Kbp
100 0 0
0.906x 22619 3.10 Gbp 22619 3.10 Gbp
NG based on genome size 3.42 Gbp.
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 14 March 2026
sRajMic1.hap1.cur.20260314.fasta.gz (825.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 63 4.17 Mbp 2 175.87 Mbp
20 162 2.96 Mbp 5 128.14 Mbp
30 299 2.16 Mbp 7 122.46 Mbp
40 487 1.56 Mbp 10 114.70 Mbp
50 754 1.09 Mbp 14 89.92 Mbp
60 1135 0.73 Mbp 20 40.15 Mbp
70 1760 408.29 Kbp 32 17.85 Mbp
80 3047 168.97 Kbp 497 243.00 Kbp
90 0 0
100 0 0
0.874x 6914 2.99 Gbp 4225 2.99 Gbp
NG based on genome size 3.42 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 14 March 2026
sRajMic1.hap2.cur.20260314.fasta.gz (807.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 68 3.87 Mbp 2 178.40 Mbp
20 173 2.83 Mbp 5 128.58 Mbp
30 315 2.07 Mbp 7 121.75 Mbp
40 511 1.48 Mbp 10 113.25 Mbp
50 787 1.07 Mbp 14 89.60 Mbp
60 1177 0.72 Mbp 20 41.06 Mbp
70 1794 429.08 Kbp 31 18.33 Mbp
80 3037 170.45 Kbp 499 260.00 Kbp
90 0 0
100 0 0
0.855x 5516 2.93 Gbp 2828 2.93 Gbp
NG based on genome size 3.42 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 15 January 2024
sRajMic1.MT.20240115.fasta.gz (5.4 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.