Rana sylvatica

wood frog

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  name: Rana sylvatica
  individuals:
  - short_name: aRanSyl1
  short_name: aRanSyl
  taxon_id: 45438
  common_name: wood frog
  genome_size: 6000000000
  genome_size_method: GoAT
  order:
    name: Anura
  family:
    name: Ranidae
  project: [ vgp ]
CC BY 2.0 Peter Paplanus (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
Bionano aRanSyl1 N/A 356.23x 3.3 GiB
Arima aRanSyl1 627.77 Gbp 104.63x 310.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 6.00 Gbp.
Last upload on 27 January 2022.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
aRanSyl1 Bionano N/A 356.23x 3.3 GiB
Arima 627.77 Gbp 104.63x 310.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 6.00 Gbp.
Last upload on 27 January 2022.
Assemblies

No assemblies.

Assembly Metadata
assembly_curated/aRanSyl1.yaml (view)
species: Rana sylvatica
specimen: aRanSyl1
projects:
  - vgp
pipeline:
- RedBean (wtdbg2) v2.5
- Racon v1.4.20
- 3D-DNA software version 180922
- Bionano Solve v. 3.6.1_11162020
- Salsa2 HiC v. 2.2;
- gcpp (Arrow polishing) v. 2.0.2-2.0.2
- merfin v. 1.0
- Freebayes v. 1.3.1
 
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.