Ranitomeya variabilis

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Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) aRanVar5 276.56 Gbp N/A 132.6 GiB
PacBio HiFi (.bam) aRanVar5 284.84 Gbp N/A 0.9 TiB
Arima aRanVar5 1096.21 Gbp N/A 567.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 7 July 2025.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
aRanVar5 PacBio HiFi (.fq) 276.56 Gbp N/A 132.6 GiB
PacBio HiFi (.bam) 284.84 Gbp N/A 0.9 TiB
Arima 1096.21 Gbp N/A 567.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 7 July 2025.
Assemblies
Individual 5 Haplotype 1 Assembly
Version assembly_curated from 10 June 2025
aRanVar5.hap1.cur.20250610.fasta.gz (1.5 GiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 179.86 Mbp 1 1.17 Gbp
20 6 152.96 Mbp 1 1.17 Gbp
30 10 121.87 Mbp 2 1.12 Gbp
40 16 85.71 Mbp 2 1.12 Gbp
50 23 68.18 Mbp 3 0.79 Gbp
60 33 53.76 Mbp 4 0.78 Gbp
70 46 36.56 Mbp 5 0.69 Gbp
80 63 26.90 Mbp 5 0.69 Gbp
90 93 14.20 Mbp 6 0.59 Gbp
100 495 9.54 Kbp 286 22.59 Kbp
1.000x 495 5.65 Gbp 286 5.65 Gbp
NG based on genome size .
Individual 5 Haplotype 2 Assembly
Version assembly_curated from 10 June 2025
aRanVar5.hap2.cur.20250610.fasta.gz (1.3 GiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 213.88 Mbp 1 1.18 Gbp
20 6 143.88 Mbp 1 1.18 Gbp
30 11 107.13 Mbp 2 1.12 Gbp
40 17 80.09 Mbp 2 1.12 Gbp
50 25 60.90 Mbp 3 0.79 Gbp
60 36 50.43 Mbp 4 0.79 Gbp
70 48 40.80 Mbp 5 0.71 Gbp
80 64 32.78 Mbp 5 0.71 Gbp
90 92 13.47 Mbp 6 0.59 Gbp
100 502 21.35 Kbp 275 21.35 Kbp
1.000x 502 5.71 Gbp 275 5.71 Gbp
NG based on genome size .
Individual 5 Mitochondrial Assembly
Version assembly_MT_rockefeller from 30 March 2025
aRanVar5.MT.20250330.fasta.gz (5.6 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.