Rhinopoma cystops

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Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) mRhiCys1 29.89 Gbp N/A 106.6 GiB
PacBio HiFi (.bam) mRhiCys1 125.02 Gbp N/A 445.8 GiB
Arima mRhiCys1 171.90 Gbp N/A 72.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 23 November 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mRhiCys1 PacBio HiFi (.fq) 29.89 Gbp N/A 106.6 GiB
PacBio HiFi (.bam) 125.02 Gbp N/A 445.8 GiB
Arima 171.90 Gbp N/A 72.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 23 November 2023.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 9 January 2026
mRhiCys1.hap1.cur.20260109.fasta.gz (805.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 4 75.36 Mbp 2 235.79 Mbp
20 8 60.08 Mbp 3 196.30 Mbp
30 14 50.50 Mbp 5 181.89 Mbp
40 22 36.90 Mbp 7 171.84 Mbp
50 32 31.22 Mbp 9 160.99 Mbp
60 43 26.30 Mbp 11 146.38 Mbp
70 57 16.59 Mbp 13 122.28 Mbp
80 83 8.82 Mbp 16 88.74 Mbp
90 142 3.63 Mbp 38 4.90 Mbp
100 617 2.21 Kbp 479 14.84 Kbp
1.000x 617 3.20 Gbp 479 3.20 Gbp
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 9 January 2026
mRhiCys1.hap2.cur.20260109.fasta.gz (660.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 95.23 Mbp 2 236.87 Mbp
20 7 70.62 Mbp 3 188.40 Mbp
30 11 59.29 Mbp 4 183.77 Mbp
40 17 43.62 Mbp 6 172.47 Mbp
50 25 32.76 Mbp 8 154.10 Mbp
60 34 26.72 Mbp 10 130.98 Mbp
70 48 16.09 Mbp 12 114.48 Mbp
80 72 8.93 Mbp 15 85.99 Mbp
90 126 3.33 Mbp 25 5.23 Mbp
100 565 13.17 Kbp 424 13.17 Kbp
1.000x 565 2.85 Gbp 424 2.85 Gbp
NG based on genome size .
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 4 December 2023
mRhiCys1.MT.20231204.fasta.gz (5.3 KiB)

Quality: not computed
Assembly Metadata
assembly_vgp_HiC_2.0/mRhiCys1.yml (view)
species: Rhinopoma cystops
specimen: mRhiCys1
projects: 
  - vgp
  - bat1k
assembled_by_group: Rockefeller
data_location: S3
release_to: S3
primary: s3://genomeark/species/Rhinopoma_cystops/mRhiCys1/assembly_vgp_HiC_2.0/mRhiCys1.HiC.hap1.20231204.fasta.gz
haplotigs: s3://genomeark/species/Rhinopoma_cystops/mRhiCys1/assembly_vgp_HiC_2.0/mRhiCys1.HiC.hap2.20231204.fasta.gz
pretext: s3://genomeark/species/Rhinopoma_cystops/mRhiCys1/assembly_vgp_HiC_2.0/evaluation/hap1/pretext/mRhiCys1_hap1_s2.pretext
pretext: s3://genomeark/species/Rhinopoma_cystops/mRhiCys1/assembly_vgp_HiC_2.0/evaluation/hap2/pretext/mRhiCys1_hap2_s2.pretext
kmer_spectra_img: s3://genomeark/species/Rhinopoma_cystops/mRhiCys1/assembly_vgp_HiC_2.0/evaluation/merqury/mRhiCys1_png/
pacbio_read_dir: s3://genomeark/species/Rhinopoma_cystops/mRhiCys1/genomic_data/pacbio_hifi/
pacbio_read_type: hifi
hic_read_dir: s3://genomeark/species/Rhinopoma_cystops/mRhiCys1/genomic_data/arima/
mito: s3://genomeark/species/Rhinopoma_cystops/mRhiCys1/assembly_MT_rockefeller/mRhiCys1.MT.20231204.fasta.gz
pipeline: 
  - hifiasm (0.19.3+galaxy0)
  - yahs (1.2a.2+galaxy1)
notes: This was a Hifiasm-HiC assembly of mRhiCys1. This hap1 assembly and hap2 assembly underwent separate HiC scaffolding with YaHS. The HiC prep kit used was Swift-IDT. The HiC reaction was using Arima kit v2.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.