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Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.fq) | mRhyPet1 | 161.85 Gbp | N/A | 85.3 GiB | |
PacBio HiFi (.bam) | mRhyPet1 | 163.93 Gbp | N/A | 666.1 GiB | |
Arima | mRhyPet1 | 452.35 Gbp | N/A | 240.3 GiB |
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 11 April 2024.
Coverage based on genome size .
Last upload on 11 April 2024.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
mRhyPet1 | PacBio HiFi (.fq) | 161.85 Gbp | N/A | 85.3 GiB | |
PacBio HiFi (.bam) | 163.93 Gbp | N/A | 666.1 GiB | ||
Arima | 452.35 Gbp | N/A | 240.3 GiB |
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 11 April 2024.
Coverage based on genome size .
Last upload on 11 April 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 7 July 2024
mRhyPet1.hap1.cur.20240707.fasta.gz (1.6 GiB)
Quality: not computed
Version assembly_curated from 7 July 2024
mRhyPet1.hap1.cur.20240707.fasta.gz (1.6 GiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 11 | 41.88 Mbp | 1 | 0.87 Gbp |
20 | 28 | 27.35 Mbp | 2 | 0.72 Gbp |
30 | 52 | 21.39 Mbp | 3 | 0.60 Gbp |
40 | 81 | 16.78 Mbp | 4 | 0.55 Gbp |
50 | 118 | 13.62 Mbp | 5 | 0.52 Gbp |
60 | 164 | 11.07 Mbp | 6 | 0.52 Gbp |
70 | 224 | 8.19 Mbp | 7 | 485.72 Mbp |
80 | 308 | 5.59 Mbp | 8 | 282.62 Mbp |
90 | 432 | 3.38 Mbp | 10 | 272.51 Mbp |
100 | 1238 | 13.90 Kbp | 468 | 13.90 Kbp |
1.000x | 1238 | 5.62 Gbp | 468 | 5.62 Gbp |
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 7 July 2024
mRhyPet1.hap2.cur.20240707.fasta.gz (1.5 GiB)
Quality: not computed
Version assembly_curated from 7 July 2024
mRhyPet1.hap2.cur.20240707.fasta.gz (1.5 GiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 11 | 37.63 Mbp | 1 | 0.88 Gbp |
20 | 27 | 28.29 Mbp | 2 | 0.72 Gbp |
30 | 49 | 22.77 Mbp | 2 | 0.72 Gbp |
40 | 75 | 18.86 Mbp | 3 | 0.60 Gbp |
50 | 107 | 13.79 Mbp | 4 | 0.55 Gbp |
60 | 150 | 11.10 Mbp | 5 | 0.53 Gbp |
70 | 207 | 8.21 Mbp | 6 | 0.52 Gbp |
80 | 286 | 5.54 Mbp | 7 | 485.04 Mbp |
90 | 412 | 3.11 Mbp | 9 | 288.87 Mbp |
100 | 1037 | 11.87 Kbp | 314 | 11.87 Kbp |
1.000x | 1037 | 5.33 Gbp | 314 | 5.33 Gbp |
NG based on genome size .
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 30 April 2024
mRhyPet1.MT.20240430.fasta.gz (5.3 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 30 April 2024
mRhyPet1.MT.20240430.fasta.gz (5.3 KiB)
Quality: not computed
Assembly Metadata
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.