Solea solea

common sole

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fSolSol
  name: Solea solea
  taxon_id: 90069
  common_name: common sole
  order:
    name: Pleuronectiformes
  family:
    name: Soleidae
  individuals:
    - short_name: fSolSol10
      biosample_id: SAMEA10984647
      sex: female
  genome_size: 713940000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fSolSol10 21.00 Gbp 29.42x 11.9 GiB
Arima fSolSol10 131.45 Gbp 184.11x 39.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.71 Gbp.
Last upload on 22 April 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fSolSol10 PacBio HiFi (.bam) 21.00 Gbp 29.42x 11.9 GiB
Arima 131.45 Gbp 184.11x 39.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.71 Gbp.
Last upload on 22 April 2023.
Assemblies
Individual 10 Primary Assembly
Version assembly_curated from 29 June 2023
fSolSol10.pri.cur.20230629.fasta.gz (178.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 10 5.64 Mbp 2 40.01 Mbp
20 24 4.32 Mbp 4 32.35 Mbp
30 42 3.67 Mbp 6 31.38 Mbp
40 64 2.90 Mbp 9 29.76 Mbp
50 91 2.35 Mbp 11 29.01 Mbp
60 126 1.81 Mbp 14 26.89 Mbp
70 172 1.30 Mbp 16 26.39 Mbp
80 241 0.79 Mbp 19 23.71 Mbp
90 546 22.60 Kbp 170 23.61 Kbp
100 0 0
0.902x 616 0.64 Gbp 243 0.64 Gbp
NG based on genome size 0.71 Gbp.
Individual 10 Alternate Assembly
Version assembly_curated from 29 June 2023
fSolSol10.alt.cur.20230629.fasta.gz (176.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 21 2.68 Mbp 21 2.68 Mbp
20 54 1.88 Mbp 54 1.88 Mbp
30 96 1.47 Mbp 96 1.47 Mbp
40 150 1.22 Mbp 150 1.22 Mbp
50 217 0.92 Mbp 217 0.92 Mbp
60 307 0.71 Mbp 307 0.71 Mbp
70 431 479.87 Kbp 431 479.87 Kbp
80 625 269.77 Kbp 625 269.77 Kbp
90 0 0
100 0 0
0.879x 1318 0.63 Gbp 1318 0.63 Gbp
NG based on genome size 0.71 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.