Squalus suckleyi

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Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) sSquSuc3 256.05 Gbp N/A 119.8 GiB
PacBio HiFi (.bam) sSquSuc3 219.43 Gbp N/A 713.8 GiB
Arima sSquSuc3 462.19 Gbp N/A 242.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 18 March 2025.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
sSquSuc3 PacBio HiFi (.fq) 256.05 Gbp N/A 119.8 GiB
PacBio HiFi (.bam) 219.43 Gbp N/A 713.8 GiB
Arima 462.19 Gbp N/A 242.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 18 March 2025.
Assemblies
Individual 5 Haplotype 1 Assembly
Version assembly_curated from 30 April 2025
sSquSuc5.hap1.cur.20250430.fasta.gz (1.2 GiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 46 8.58 Mbp 2 247.49 Mbp
20 123 5.86 Mbp 5 201.92 Mbp
30 228 4.31 Mbp 8 174.55 Mbp
40 372 3.28 Mbp 11 164.42 Mbp
50 558 2.46 Mbp 14 141.14 Mbp
60 815 1.74 Mbp 19 92.13 Mbp
70 1186 1.17 Mbp 25 67.83 Mbp
80 1760 0.71 Mbp 64 4.99 Mbp
90 2814 344.02 Kbp 330 1.05 Mbp
100 7476 387 bp 3203 5.49 Kbp
1.000x 7476 5.30 Gbp 3203 5.30 Gbp
NG based on genome size .
Individual 5 Haplotype 2 Assembly
Version assembly_curated from 30 April 2025
sSquSuc5.hap2.cur.20250430.fasta.gz (1.1 GiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 47 8.07 Mbp 2 246.42 Mbp
20 115 5.83 Mbp 4 203.31 Mbp
30 211 4.16 Mbp 7 187.03 Mbp
40 337 3.25 Mbp 9 177.15 Mbp
50 499 2.53 Mbp 12 153.06 Mbp
60 720 1.76 Mbp 15 128.91 Mbp
70 1041 1.20 Mbp 19 91.51 Mbp
80 1529 0.74 Mbp 25 70.82 Mbp
90 2410 370.51 Kbp 86 2.16 Mbp
100 6006 717 bp 1862 5.55 Kbp
1.000x 6006 4.66 Gbp 1862 4.66 Gbp
NG based on genome size .
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.