Sternotherus odoratus

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Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) rSteOdo2 107.26 Gbp 61.45x 63.6 GiB
Arima rSteOdo2 108.24 Gbp 62.01x 55.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.75 Gbp.
Last upload on 29 March 2025.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
rSteOdo2 PacBio HiFi (.fq) 107.26 Gbp 61.45x 63.6 GiB
Arima 108.24 Gbp 62.01x 55.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.75 Gbp.
Last upload on 29 March 2025.
Assemblies
Individual 2 Primary Assembly
Version assembly_curated from 19 May 2025
rSteOdo2.pri.cur.20250519.fasta.gz (551.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 47.70 Mbp 1 305.34 Mbp
20 8 32.44 Mbp 2 224.23 Mbp
30 15 18.57 Mbp 2 224.23 Mbp
40 26 11.09 Mbp 4 109.76 Mbp
50 48 6.73 Mbp 5 107.61 Mbp
60 82 3.87 Mbp 7 105.33 Mbp
70 143 2.08 Mbp 9 84.63 Mbp
80 252 1.27 Mbp 11 62.78 Mbp
90 440 0.70 Mbp 16 20.53 Mbp
100 1152 3.66 Kbp 73 17.18 Kbp
1.000x 1152 1.75 Gbp 73 1.75 Gbp
NG based on genome size 1.75 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 19 May 2025
rSteOdo2.alt.cur.20250519.fasta.gz (547.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 82.32 Mbp 1 306.56 Mbp
20 5 50.42 Mbp 2 225.59 Mbp
30 9 41.44 Mbp 2 225.59 Mbp
40 15 25.90 Mbp 4 114.60 Mbp
50 23 17.03 Mbp 5 108.35 Mbp
60 35 11.46 Mbp 7 106.96 Mbp
70 55 6.83 Mbp 8 92.89 Mbp
80 92 3.46 Mbp 11 64.12 Mbp
90 177 1.28 Mbp 15 26.14 Mbp
100 770 15.17 Kbp 217 15.17 Kbp
1.000x 770 1.76 Gbp 217 1.76 Gbp
NG based on genome size 1.75 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.