Struthio camelus x Struthio molybdophanes
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Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.fq) | bStrCam1 | 117.52 Gbp | N/A | 61.9 GiB | |
PacBio HiFi (.bam) | bStrCam1 | 119.33 Gbp | N/A | 491.5 GiB | |
Arima | bStrCam1 | 206.63 Gbp | N/A | 103.6 GiB |
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 1 July 2024.
Coverage based on genome size .
Last upload on 1 July 2024.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
bStrCam1 | PacBio HiFi (.fq) | 117.52 Gbp | N/A | 61.9 GiB | |
PacBio HiFi (.bam) | 119.33 Gbp | N/A | 491.5 GiB | ||
Arima | 206.63 Gbp | N/A | 103.6 GiB |
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 1 July 2024.
Coverage based on genome size .
Last upload on 1 July 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 8 July 2024
bStrCam1.hap1.cur.20240708.fasta.gz (364.3 MiB)
Quality: not computed
Version assembly_curated from 8 July 2024
bStrCam1.hap1.cur.20240708.fasta.gz (364.3 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 2 | 84.05 Mbp | 1 | 225.57 Mbp |
20 | 4 | 61.97 Mbp | 2 | 173.67 Mbp |
30 | 6 | 54.04 Mbp | 3 | 148.28 Mbp |
40 | 10 | 35.43 Mbp | 4 | 89.93 Mbp |
50 | 14 | 28.83 Mbp | 6 | 84.63 Mbp |
60 | 19 | 22.62 Mbp | 7 | 70.39 Mbp |
70 | 27 | 15.30 Mbp | 11 | 34.55 Mbp |
80 | 41 | 9.25 Mbp | 15 | 25.61 Mbp |
90 | 62 | 4.72 Mbp | 22 | 15.48 Mbp |
100 | 378 | 12.52 Kbp | 262 | 12.52 Kbp |
1.000x | 378 | 1.45 Gbp | 262 | 1.45 Gbp |
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 8 July 2024
bStrCam1.hap2.cur.20240708.fasta.gz (333.4 MiB)
Quality: not computed
Version assembly_curated from 8 July 2024
bStrCam1.hap2.cur.20240708.fasta.gz (333.4 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 2 | 83.22 Mbp | 1 | 224.66 Mbp |
20 | 4 | 60.65 Mbp | 2 | 171.62 Mbp |
30 | 7 | 36.77 Mbp | 3 | 145.08 Mbp |
40 | 11 | 31.45 Mbp | 4 | 86.63 Mbp |
50 | 15 | 28.54 Mbp | 5 | 74.71 Mbp |
60 | 21 | 22.48 Mbp | 8 | 39.89 Mbp |
70 | 28 | 15.51 Mbp | 13 | 28.69 Mbp |
80 | 41 | 8.28 Mbp | 18 | 21.32 Mbp |
90 | 64 | 3.89 Mbp | 29 | 7.84 Mbp |
100 | 332 | 17.94 Kbp | 250 | 17.94 Kbp |
1.000x | 332 | 1.38 Gbp | 250 | 1.38 Gbp |
NG based on genome size .
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 28 March 2024
bStrCam1.MT.20240328.fasta.gz (5.3 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 28 March 2024
bStrCam1.MT.20240328.fasta.gz (5.3 KiB)
Quality: not computed
Assembly Metadata
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.