Symphalangus syndactylus
siamang gibbon
Included in the T2T.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
metadata.yaml (view) (edit on github) |
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CC BY-SA 2.0 su neko (flickr)
Raw Data by Technology
Bases and Coverage are approximate.
Coverage based on genome size 3.30 Gbp.
Last upload on 3 September 2025.
Coverage based on genome size 3.30 Gbp.
Last upload on 3 September 2025.
Raw Data by Individual
Bases and Coverage are approximate.
Coverage based on genome size 3.30 Gbp.
Last upload on 3 September 2025.
Coverage based on genome size 3.30 Gbp.
Last upload on 3 September 2025.
Assemblies
Individual 1 Diploid Assembly
Version assembly_verkko_1.4.1r from 6 September 2023
mSymSyn1.dip.20230906.fasta.gz (1.4 GiB)
Quality: not computed
Version assembly_verkko_1.4.1r from 6 September 2023
mSymSyn1.dip.20230906.fasta.gz (1.4 GiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 2 | 167.65 Mbp | 2 | 167.65 Mbp |
20 | 4 | 166.27 Mbp | 4 | 166.27 Mbp |
30 | 6 | 165.07 Mbp | 6 | 165.07 Mbp |
40 | 8 | 163.59 Mbp | 8 | 163.59 Mbp |
50 | 10 | 161.71 Mbp | 10 | 161.71 Mbp |
60 | 13 | 154.49 Mbp | 13 | 154.49 Mbp |
70 | 15 | 153.62 Mbp | 15 | 153.62 Mbp |
80 | 17 | 148.42 Mbp | 17 | 148.42 Mbp |
90 | 19 | 146.77 Mbp | 19 | 146.77 Mbp |
100 | 21 | 144.67 Mbp | 21 | 144.67 Mbp |
1.930x | 119 | 6.36 Gbp | 115 | 6.36 Gbp |
NG based on genome size 3.30 Gbp.
Individual 1 Primary Assembly
Version assembly_curated from 14 May 2024
mSymSyn1.pri.cur.20240514.fasta.gz (882.8 MiB)
Quality: not computed
Version assembly_curated from 14 May 2024
mSymSyn1.pri.cur.20240514.fasta.gz (882.8 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 2 | 167.25 Mbp | 2 | 167.25 Mbp |
20 | 4 | 161.71 Mbp | 4 | 161.71 Mbp |
30 | 7 | 154.49 Mbp | 7 | 154.49 Mbp |
40 | 9 | 153.29 Mbp | 9 | 153.29 Mbp |
50 | 11 | 146.71 Mbp | 11 | 146.71 Mbp |
60 | 13 | 141.40 Mbp | 13 | 141.40 Mbp |
70 | 16 | 120.31 Mbp | 16 | 120.31 Mbp |
80 | 19 | 106.26 Mbp | 19 | 106.26 Mbp |
90 | 22 | 80.75 Mbp | 22 | 80.75 Mbp |
100 | 0 | 0 | ||
0.990x | 27 | 3.26 Gbp | 26 | 3.26 Gbp |
NG based on genome size 3.30 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 14 May 2024
mSymSyn1.alt.cur.20240514.fasta.gz (835.6 MiB)
Quality: not computed
Version assembly_curated from 14 May 2024
mSymSyn1.alt.cur.20240514.fasta.gz (835.6 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 2 | 166.27 Mbp | 2 | 166.27 Mbp |
20 | 4 | 164.59 Mbp | 4 | 164.59 Mbp |
30 | 6 | 162.45 Mbp | 6 | 162.45 Mbp |
40 | 9 | 145.50 Mbp | 9 | 145.50 Mbp |
50 | 11 | 136.33 Mbp | 11 | 136.33 Mbp |
60 | 13 | 134.01 Mbp | 13 | 134.01 Mbp |
70 | 16 | 112.58 Mbp | 16 | 112.58 Mbp |
80 | 19 | 101.94 Mbp | 19 | 101.94 Mbp |
90 | 23 | 75.55 Mbp | 23 | 75.55 Mbp |
100 | 0 | 0 | ||
0.939x | 43 | 3.10 Gbp | 40 | 3.10 Gbp |
NG based on genome size 3.30 Gbp.
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 14 May 2024
mSymSyn1.hap1.cur.20240514.fasta.gz (876.5 MiB)
Quality: not computed
Version assembly_curated from 14 May 2024
mSymSyn1.hap1.cur.20240514.fasta.gz (876.5 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 2 | 167.25 Mbp | 2 | 167.25 Mbp |
20 | 4 | 161.71 Mbp | 4 | 161.71 Mbp |
30 | 7 | 154.49 Mbp | 7 | 154.49 Mbp |
40 | 9 | 153.29 Mbp | 9 | 153.29 Mbp |
50 | 11 | 146.71 Mbp | 11 | 146.71 Mbp |
60 | 13 | 141.40 Mbp | 13 | 141.40 Mbp |
70 | 16 | 120.31 Mbp | 16 | 120.31 Mbp |
80 | 19 | 106.26 Mbp | 19 | 106.26 Mbp |
90 | 22 | 80.75 Mbp | 22 | 80.75 Mbp |
100 | 0 | 0 | ||
0.981x | 26 | 3.23 Gbp | 25 | 3.23 Gbp |
NG based on genome size 3.30 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 14 May 2024
mSymSyn1.hap2.cur.20240514.fasta.gz (842.0 MiB)
Quality: not computed
Version assembly_curated from 14 May 2024
mSymSyn1.hap2.cur.20240514.fasta.gz (842.0 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 2 | 166.27 Mbp | 2 | 166.27 Mbp |
20 | 4 | 164.59 Mbp | 4 | 164.59 Mbp |
30 | 6 | 162.45 Mbp | 6 | 162.45 Mbp |
40 | 9 | 145.50 Mbp | 9 | 145.50 Mbp |
50 | 11 | 136.33 Mbp | 11 | 136.33 Mbp |
60 | 13 | 134.01 Mbp | 13 | 134.01 Mbp |
70 | 16 | 112.58 Mbp | 16 | 112.58 Mbp |
80 | 19 | 101.94 Mbp | 19 | 101.94 Mbp |
90 | 23 | 75.55 Mbp | 23 | 75.55 Mbp |
100 | 0 | 0 | ||
0.948x | 44 | 3.13 Gbp | 41 | 3.13 Gbp |
NG based on genome size 3.30 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_curated from 22 November 2023
mSymSyn1.MT.cur.20231122.fasta.gz (5.3 KiB)
Quality: not computed
Version assembly_curated from 22 November 2023
mSymSyn1.MT.cur.20231122.fasta.gz (5.3 KiB)
Quality: not computed
Individual 2 Haplotype 1 Assembly
Version assembly_verkko_HIFIASM-corrected-ONT_ONT_Hi-C_v2.2.1 from 1 May 2025
mSymSyn2.HiC.hap1.20250501.fasta.gz (797.4 MiB)
Quality: not computed
Version assembly_verkko_HIFIASM-corrected-ONT_ONT_Hi-C_v2.2.1 from 1 May 2025
mSymSyn2.HiC.hap1.20250501.fasta.gz (797.4 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 2 | 166.05 Mbp | 2 | 170.59 Mbp |
20 | 5 | 156.37 Mbp | 4 | 166.05 Mbp |
30 | 7 | 146.96 Mbp | 6 | 159.32 Mbp |
40 | 9 | 145.42 Mbp | 9 | 146.96 Mbp |
50 | 11 | 141.78 Mbp | 11 | 145.42 Mbp |
60 | 14 | 115.24 Mbp | 13 | 132.52 Mbp |
70 | 17 | 104.76 Mbp | 16 | 124.03 Mbp |
80 | 20 | 88.23 Mbp | 19 | 108.20 Mbp |
90 | 24 | 79.18 Mbp | 22 | 85.89 Mbp |
100 | 0 | 0 | ||
0.993x | 126 | 3.27 Gbp | 90 | 3.27 Gbp |
NG based on genome size 3.30 Gbp.
Individual 2 Haplotype 2 Assembly
Version assembly_verkko_HIFIASM-corrected-ONT_ONT_Hi-C_v2.2.1 from 1 May 2025
mSymSyn2.HiC.hap2.20250501.fasta.gz (795.5 MiB)
Quality: not computed
Version assembly_verkko_HIFIASM-corrected-ONT_ONT_Hi-C_v2.2.1 from 1 May 2025
mSymSyn2.HiC.hap2.20250501.fasta.gz (795.5 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 2 | 170.13 Mbp | 2 | 170.13 Mbp |
20 | 4 | 167.23 Mbp | 4 | 167.69 Mbp |
30 | 6 | 152.76 Mbp | 6 | 166.03 Mbp |
40 | 9 | 146.43 Mbp | 8 | 159.13 Mbp |
50 | 11 | 143.65 Mbp | 11 | 145.93 Mbp |
60 | 13 | 132.77 Mbp | 13 | 132.77 Mbp |
70 | 16 | 117.05 Mbp | 16 | 120.41 Mbp |
80 | 19 | 99.76 Mbp | 18 | 107.22 Mbp |
90 | 23 | 78.39 Mbp | 22 | 82.16 Mbp |
100 | 0 | 0 | ||
0.992x | 58 | 3.27 Gbp | 29 | 3.27 Gbp |
NG based on genome size 3.30 Gbp.
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.