No image
Raw Data by Technology
| Datatype | Individual | Bases | Coverage | Bytes | Access |
|---|---|---|---|---|---|
| PacBio HiFi (.fq) | mTenEca1 | 204.97 Gbp | N/A | 93.6 GiB | |
| PacBio HiFi (.bam) | mTenEca1 | 206.92 Gbp | N/A | 676.4 GiB | |
| Arima | mTenEca1 | 774.41 Gbp | N/A | 391.6 GiB |
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 4 June 2025.
Coverage based on genome size .
Last upload on 4 June 2025.
Raw Data by Individual
| Individual | Datatype | Bases | Coverage | Bytes | Access |
|---|---|---|---|---|---|
| mTenEca1 | PacBio HiFi (.fq) | 204.97 Gbp | N/A | 93.6 GiB | |
| PacBio HiFi (.bam) | 206.92 Gbp | N/A | 676.4 GiB | ||
| Arima | 774.41 Gbp | N/A | 391.6 GiB |
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 4 June 2025.
Coverage based on genome size .
Last upload on 4 June 2025.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 14 May 2025
mTenEca1.hap1.cur.20250514.fasta.gz (1.0 GiB)
Quality: not computed
Version assembly_curated from 14 May 2025
mTenEca1.hap1.cur.20250514.fasta.gz (1.0 GiB)
Quality: not computed
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 4 | 98.24 Mbp | 2 | 304.60 Mbp |
| 20 | 8 | 78.87 Mbp | 3 | 220.98 Mbp |
| 30 | 14 | 66.04 Mbp | 5 | 186.96 Mbp |
| 40 | 20 | 55.34 Mbp | 7 | 169.75 Mbp |
| 50 | 28 | 41.60 Mbp | 10 | 163.96 Mbp |
| 60 | 40 | 27.68 Mbp | 12 | 153.29 Mbp |
| 70 | 57 | 15.56 Mbp | 15 | 127.50 Mbp |
| 80 | 108 | 3.95 Mbp | 19 | 74.21 Mbp |
| 90 | 339 | 0.87 Mbp | 183 | 0.94 Mbp |
| 100 | 2355 | 2.81 Kbp | 2180 | 12.71 Kbp |
| 1.000x | 2355 | 3.92 Gbp | 2180 | 3.92 Gbp |
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 14 May 2025
mTenEca1.hap2.cur.20250514.fasta.gz (0.9 GiB)
Quality: not computed
Version assembly_curated from 14 May 2025
mTenEca1.hap2.cur.20250514.fasta.gz (0.9 GiB)
Quality: not computed
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 3 | 110.32 Mbp | 2 | 302.22 Mbp |
| 20 | 6 | 101.60 Mbp | 3 | 217.60 Mbp |
| 30 | 10 | 75.50 Mbp | 4 | 203.47 Mbp |
| 40 | 14 | 67.59 Mbp | 6 | 173.86 Mbp |
| 50 | 20 | 54.74 Mbp | 8 | 165.25 Mbp |
| 60 | 27 | 36.58 Mbp | 10 | 152.36 Mbp |
| 70 | 38 | 24.54 Mbp | 13 | 135.93 Mbp |
| 80 | 60 | 8.09 Mbp | 15 | 111.24 Mbp |
| 90 | 171 | 1.23 Mbp | 40 | 1.78 Mbp |
| 100 | 1393 | 1.85 Kbp | 1233 | 12.71 Kbp |
| 1.000x | 1393 | 3.33 Gbp | 1233 | 3.33 Gbp |
NG based on genome size .
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 10 March 2025
mTenEca1.MT.20250310.fasta.gz (16.5 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 10 March 2025
mTenEca1.MT.20250310.fasta.gz (16.5 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.