Tenrec ecaudatus

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Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) mTenEca1 204.97 Gbp N/A 93.6 GiB
PacBio HiFi (.bam) mTenEca1 206.92 Gbp N/A 676.4 GiB
Arima mTenEca1 385.50 Gbp N/A 203.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 14 February 2025.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mTenEca1 PacBio HiFi (.fq) 204.97 Gbp N/A 93.6 GiB
PacBio HiFi (.bam) 206.92 Gbp N/A 676.4 GiB
Arima 385.50 Gbp N/A 203.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 14 February 2025.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_vgp_HiC_2.0 from 10 March 2025
mTenEca1.HiC.hap1.20250310.fasta.gz (0.9 GiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 4 98.24 Mbp 2 243.93 Mbp
20 8 76.23 Mbp 4 165.33 Mbp
30 14 63.33 Mbp 6 158.12 Mbp
40 20 54.88 Mbp 9 136.39 Mbp
50 28 39.35 Mbp 12 117.72 Mbp
60 40 27.28 Mbp 15 99.39 Mbp
70 59 12.10 Mbp 21 52.41 Mbp
80 134 2.69 Mbp 72 2.86 Mbp
90 436 0.65 Mbp 368 0.65 Mbp
100 3257 12.71 Kbp 3169 12.71 Kbp
1.000x 3257 3.83 Gbp 3169 3.83 Gbp
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_vgp_HiC_2.0 from 10 March 2025
mTenEca1.HiC.hap2.20250310.fasta.gz (0.9 GiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 110.32 Mbp 2 241.79 Mbp
20 7 100.72 Mbp 4 167.31 Mbp
30 10 89.51 Mbp 6 153.09 Mbp
40 15 67.59 Mbp 8 136.99 Mbp
50 21 54.78 Mbp 11 116.57 Mbp
60 28 36.58 Mbp 14 104.39 Mbp
70 40 24.06 Mbp 18 70.91 Mbp
80 61 10.40 Mbp 24 30.08 Mbp
90 163 1.32 Mbp 87 1.51 Mbp
100 1479 12.71 Kbp 1393 12.71 Kbp
1.000x 1479 3.51 Gbp 1393 3.51 Gbp
NG based on genome size .
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.