Trisopterus luscus

Not provided by NCBI taxonomy

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fTriLus
  name: Trisopterus luscus
  taxon_id: 27722
  common_name: Not provided by NCBI taxonomy
  order:
    name: Gadiformes
  family:
    name: Gadidae
  individuals:
    - short_name: fTriLus1
      biosample_id: SAMEA114298638
      sex:
  genome_size: 860640000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fTriLus1 24.83 Gbp 28.85x 7.9 GiB
Arima fTriLus1 86.63 Gbp 100.66x 25.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.86 Gbp.
Last upload on 29 March 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fTriLus1 PacBio HiFi (.bam) 24.83 Gbp 28.85x 7.9 GiB
Arima 86.63 Gbp 100.66x 25.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.86 Gbp.
Last upload on 29 March 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 24 May 2024
fTriLus1.hap1.asm.20240524.fasta.gz (143.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 73 0.74 Mbp 5 19.31 Mbp
20 235 403.86 Kbp 9 18.30 Mbp
30 517 232.55 Kbp 14 16.05 Mbp
40 1016 126.53 Kbp 20 12.74 Mbp
50 2019 60.57 Kbp 75 345.03 Kbp
60 4574 17.81 Kbp 1599 18.20 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.608x 5206 0.52 Gbp 2264 0.52 Gbp
NG based on genome size 0.86 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 24 May 2024
fTriLus1.hap2.asm.20240524.fasta.gz (152.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 65 0.88 Mbp 4 20.86 Mbp
20 203 484.75 Kbp 9 18.88 Mbp
30 429 303.28 Kbp 13 18.57 Mbp
40 802 180.15 Kbp 19 15.37 Mbp
50 1455 95.01 Kbp 29 1.13 Mbp
60 2846 39.66 Kbp 364 100.11 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.650x 4625 0.56 Gbp 1717 0.56 Gbp
NG based on genome size 0.86 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 24 May 2024
fTriLus1.MT.20240524.fasta.gz (5.4 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.