Vanellus vanellus

Lapwing

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bVanVan
  name: Vanellus vanellus
  taxon_id: 100859
  common_name: Lapwing
  order:
    name: Charadriiformes
  family:
    name: Charadriidae
  individuals:
    - short_name: bVanVan1
      biosample_id: SAMEA113398832
      sex: male
  genome_size: 1633260000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bVanVan1 64.50 Gbp 39.49x 26.9 GiB
Arima bVanVan1 222.68 Gbp 136.34x 61.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.63 Gbp.
Last upload on 8 March 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bVanVan1 PacBio HiFi (.bam) 64.50 Gbp 39.49x 26.9 GiB
Arima 222.68 Gbp 136.34x 61.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.63 Gbp.
Last upload on 8 March 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 12 March 2024
bVanVan1.hap1.asm.20240312.fasta.gz (393.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 23 5.58 Mbp 1 220.22 Mbp
20 59 3.87 Mbp 2 169.95 Mbp
30 108 2.88 Mbp 3 127.88 Mbp
40 172 2.24 Mbp 5 85.10 Mbp
50 257 1.65 Mbp 7 71.94 Mbp
60 373 1.21 Mbp 12 25.22 Mbp
70 539 0.79 Mbp 22 7.99 Mbp
80 871 291.00 Kbp 126 482.27 Kbp
90 2628 29.22 Kbp 1744 30.25 Kbp
100 0 0
0.908x 3418 1.48 Gbp 2535 1.48 Gbp
NG based on genome size 1.63 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 12 March 2024
bVanVan1.hap2.asm.20240312.fasta.gz (378.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 24 5.62 Mbp 1 217.96 Mbp
20 58 4.19 Mbp 2 170.65 Mbp
30 102 3.13 Mbp 3 128.47 Mbp
40 161 2.48 Mbp 5 81.78 Mbp
50 240 1.75 Mbp 8 42.19 Mbp
60 352 1.20 Mbp 13 24.14 Mbp
70 525 0.73 Mbp 23 9.25 Mbp
80 933 150.91 Kbp 170 211.63 Kbp
90 0 0
100 0 0
0.821x 1571 1.34 Gbp 749 1.34 Gbp
NG based on genome size 1.63 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 12 March 2024
bVanVan1.MT.20240312.fasta.gz (5.4 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.