Vulpes vulpes

red fox

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mVulVul
  name: Vulpes vulpes
  taxon_id: 9627
  common_name: red fox
  order:
    name: Carnivora
  family:
    name: Canidae
  individuals:
    - short_name: mVulVul1
      biosample_id: SAMEA113398840
      sex: female
  genome_size: 2787300000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mVulVul1 66.56 Gbp 23.88x 21.6 GiB
Arima mVulVul1 324.06 Gbp 116.26x 89.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.79 Gbp.
Last upload on 5 April 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mVulVul1 PacBio HiFi (.bam) 66.56 Gbp 23.88x 21.6 GiB
Arima 324.06 Gbp 116.26x 89.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.79 Gbp.
Last upload on 5 April 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 18 June 2024
mVulVul1.hap1.cur.20240618.fasta.gz (697.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 48 4.65 Mbp 2 189.89 Mbp
20 119 3.37 Mbp 3 172.19 Mbp
30 213 2.67 Mbp 5 155.10 Mbp
40 330 2.16 Mbp 7 139.75 Mbp
50 473 1.72 Mbp 9 139.11 Mbp
60 656 1.34 Mbp 11 125.95 Mbp
70 904 0.92 Mbp 14 111.74 Mbp
80 1318 467.24 Kbp 16 103.55 Mbp
90 0 0
100 0 0
0.865x 2306 2.41 Gbp 461 2.41 Gbp
NG based on genome size 2.79 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 18 June 2024
mVulVul1.hap2.cur.20240618.fasta.gz (692.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 49 4.50 Mbp 2 190.33 Mbp
20 122 3.32 Mbp 3 171.43 Mbp
30 216 2.67 Mbp 5 153.31 Mbp
40 332 2.17 Mbp 7 140.02 Mbp
50 475 1.74 Mbp 9 137.61 Mbp
60 659 1.33 Mbp 11 125.03 Mbp
70 907 0.94 Mbp 14 111.15 Mbp
80 1316 457.36 Kbp 16 103.81 Mbp
90 0 0
100 0 0
0.860x 2169 2.40 Gbp 350 2.40 Gbp
NG based on genome size 2.79 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 4 April 2024
mVulVul1.MT.20240404.fasta.gz (5.0 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.