Zalophus californianus

California sea lion

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank mZalCal1: GCA_009762305.2 mZalCal1: GCA_009762295.2
ENA mZalCal1: GCA_009762305.2 mZalCal1: GCA_009762295.2
UCSC Genome Browser mZalCal1: GCA_009762305.2 mZalCal1: GCA_009762295.2

metadata.yaml (view) (edit on github)
species:
  common_name: California sea lion
  family:
    name: Otariidae
  genome_size: 3150000000
  genome_size_method: null
  individuals:
  - short_name: mZalCal1
  name: Zalophus californianus
  order:
    name: Carnivora
  short_name: mZalCal
  taxon_id: 9704
  project: [ vgp ]
CC BY-SA 2.0 Gregory Smith (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR mZalCal1 254.46 Gbp 80.78x 448.9 GiB
10x mZalCal1 195.17 Gbp 61.96x 94.2 GiB
Bionano mZalCal1 N/A 129.51x 799.9 MiB
Arima mZalCal1 200.89 Gbp 63.77x 124.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.15 Gbp.
Last upload on 5 September 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mZalCal1 PacBio CLR 254.46 Gbp 80.78x 448.9 GiB
10x 195.17 Gbp 61.96x 94.2 GiB
Bionano N/A 129.51x 799.9 MiB
Arima 200.89 Gbp 63.77x 124.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.15 Gbp.
Last upload on 5 September 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 13 March 2020
mZalCal1.pri.cur.20200313.fasta.gz (697.5 MiB)

Quality: 43.2 errors/Mb (QV=43.64)

Contigs Scaffolds
NG LG Len LG Len
10 3 70.85 Mbp 1 203.41 Mbp
20 9 48.36 Mbp 3 191.60 Mbp
30 16 40.52 Mbp 4 154.43 Mbp
40 25 30.66 Mbp 7 140.58 Mbp
50 36 24.59 Mbp 9 129.41 Mbp
60 53 14.65 Mbp 11 113.59 Mbp
70 83 7.13 Mbp 15 89.16 Mbp
80 0 0
90 0 0
100 0 0
0.759x 231 2.39 Gbp 46 2.41 Gbp
NG based on genome size 3.15 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 13 March 2020
mZalCal1.alt.cur.20200313.fasta.gz (578.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 81 2.88 Mbp 81 2.88 Mbp
20 215 1.99 Mbp 215 1.99 Mbp
30 406 1.39 Mbp 406 1.39 Mbp
40 680 0.97 Mbp 680 0.97 Mbp
50 1089 0.60 Mbp 1089 0.60 Mbp
60 2055 145.88 Kbp 2055 145.88 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.626x 3096 1.97 Gbp 3096 1.97 Gbp
NG based on genome size 3.15 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 4 October 2019
mZalCal1.MT.20191004.fasta.gz (4.9 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.