Zapus hudsonius

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Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) mZapHud1 150.01 Gbp N/A 73.1 GiB
mZapHud2 93.97 Gbp N/A 40.1 GiB
PacBio HiFi (.bam) mZapHud1 152.22 Gbp N/A 506.7 GiB
mZapHud2 94.79 Gbp N/A 310.1 GiB
Arima mZapHud1 205.62 Gbp N/A 112.3 GiB
mZapHud2 208.44 Gbp N/A 110.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 10 March 2025.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mZapHud1 PacBio HiFi (.fq) 150.01 Gbp N/A 73.1 GiB
PacBio HiFi (.bam) 152.22 Gbp N/A 506.7 GiB
Arima 205.62 Gbp N/A 112.3 GiB
mZapHud2 PacBio HiFi (.fq) 93.97 Gbp N/A 40.1 GiB
PacBio HiFi (.bam) 94.79 Gbp N/A 310.1 GiB
Arima 208.44 Gbp N/A 110.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 10 March 2025.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 1 May 2026
mZapHud1.hap1.cur.20260501.fasta.gz (705.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 74.69 Mbp 2 181.07 Mbp
20 7 60.77 Mbp 3 142.36 Mbp
30 12 43.30 Mbp 5 110.13 Mbp
40 18 34.44 Mbp 7 102.52 Mbp
50 26 31.06 Mbp 10 86.17 Mbp
60 35 25.16 Mbp 14 59.12 Mbp
70 46 17.79 Mbp 18 54.10 Mbp
80 65 10.41 Mbp 24 39.96 Mbp
90 108 3.37 Mbp 31 27.64 Mbp
100 506 793 bp 263 12.36 Kbp
1.000x 506 2.47 Gbp 263 2.47 Gbp
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 1 May 2026
mZapHud1.hap2.cur.20260501.fasta.gz (569.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 69.16 Mbp 2 142.59 Mbp
20 6 61.68 Mbp 3 140.04 Mbp
30 10 51.08 Mbp 5 101.15 Mbp
40 15 43.23 Mbp 7 95.17 Mbp
50 21 32.97 Mbp 10 67.90 Mbp
60 28 27.72 Mbp 13 59.13 Mbp
70 36 21.24 Mbp 17 53.09 Mbp
80 49 13.74 Mbp 22 41.89 Mbp
90 72 5.84 Mbp 27 27.79 Mbp
100 339 1.57 Kbp 163 17.27 Kbp
1.000x 339 2.14 Gbp 163 2.14 Gbp
NG based on genome size .
Individual 2 Haplotype 1 Assembly
Version assembly_curated from 1 May 2026
mZapHud2.hap1.cur.20260501.fasta.gz (697.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 78.38 Mbp 2 181.15 Mbp
20 7 53.55 Mbp 3 140.87 Mbp
30 12 44.80 Mbp 5 110.12 Mbp
40 18 35.20 Mbp 7 101.90 Mbp
50 26 29.68 Mbp 10 86.23 Mbp
60 35 23.31 Mbp 13 61.58 Mbp
70 48 15.24 Mbp 17 54.76 Mbp
80 70 7.90 Mbp 22 44.77 Mbp
90 121 2.51 Mbp 29 27.94 Mbp
100 775 5.08 Kbp 309 13.24 Kbp
1.000x 775 2.44 Gbp 309 2.44 Gbp
NG based on genome size .
Individual 2 Haplotype 2 Assembly
Version assembly_curated from 1 May 2026
mZapHud2.hap2.cur.20260501.fasta.gz (641.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 4 65.97 Mbp 1 250.72 Mbp
20 7 61.66 Mbp 3 143.60 Mbp
30 12 48.21 Mbp 5 112.45 Mbp
40 17 40.46 Mbp 7 101.04 Mbp
50 24 33.12 Mbp 9 93.75 Mbp
60 34 20.71 Mbp 13 61.66 Mbp
70 48 14.91 Mbp 17 55.05 Mbp
80 68 8.36 Mbp 22 44.63 Mbp
90 117 2.47 Mbp 29 27.65 Mbp
100 724 3.05 Kbp 262 15.82 Kbp
1.000x 724 2.44 Gbp 262 2.44 Gbp
NG based on genome size .
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.