Zosterops lateralis

silver-eye

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bZosLat
  name: Zosterops lateralis
  taxon_id: 43581
  common_name: silver-eye
  order:
    name: Passeriformes
  family:
    name: Zosteropidae
  individuals:
    - short_name: bZosLat1
      biosample_id: SAMEA112953925
      sex: female
  genome_size: 1320300000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bZosLat1 48.23 Gbp 36.53x 19.1 GiB
Arima bZosLat1 87.63 Gbp 66.37x 25.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.32 Gbp.
Last upload on 4 October 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bZosLat1 PacBio HiFi (.bam) 48.23 Gbp 36.53x 19.1 GiB
Arima 87.63 Gbp 66.37x 25.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.32 Gbp.
Last upload on 4 October 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 4 October 2024
bZosLat1.hap1.asm.20241004.fasta.gz (272.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 13 8.63 Mbp 1 153.35 Mbp
20 31 5.65 Mbp 2 116.86 Mbp
30 58 4.38 Mbp 4 84.56 Mbp
40 93 3.31 Mbp 5 74.40 Mbp
50 139 2.55 Mbp 7 58.98 Mbp
60 199 1.79 Mbp 11 26.25 Mbp
70 292 1.14 Mbp 17 16.28 Mbp
80 486 361.17 Kbp 32 3.92 Mbp
90 0 0
100 0 0
0.843x 1116 1.11 Gbp 470 1.11 Gbp
NG based on genome size 1.32 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 4 October 2024
bZosLat1.hap2.asm.20241004.fasta.gz (260.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 12 8.76 Mbp 1 154.48 Mbp
20 31 5.78 Mbp 2 117.79 Mbp
30 58 4.33 Mbp 4 74.58 Mbp
40 94 3.07 Mbp 5 72.46 Mbp
50 144 2.24 Mbp 8 38.60 Mbp
60 213 1.60 Mbp 12 23.94 Mbp
70 325 0.82 Mbp 19 14.38 Mbp
80 814 66.97 Kbp 219 80.63 Kbp
90 0 0
100 0 0
0.816x 1475 1.08 Gbp 853 1.08 Gbp
NG based on genome size 1.32 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 4 October 2024
bZosLat1.MT.20241004.fasta.gz (5.2 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.