Accipiter gentilis

northern goshawk

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank bAccGen1: GCA_929443795.2 bAccGen1: GCA_929447715.1
ENA bAccGen1: GCA_929443795.2 bAccGen1: GCA_929447715.1
UCSC Genome Browser bAccGen1: GCA_929443795.2 bAccGen1: GCA_929447715.1

metadata.yaml (view) (edit on github)
species:
  short_name: bAccGen
  name: Accipiter gentilis
  taxon_id: 8957
  common_name: northern goshawk
  order:
    name: Accipitriformes
  family:
    name: Accipitridae
  individuals:
    - short_name: bAccGen1
      biosample_id: SAMEA8235650
      sex: female
  genome_size:
  genome_size_method:
  project: [ vgp ]
CC BY-SA 2.0, Steve Garvie (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bAccGen1 50.34 Gbp 36.01x 78.3 GiB
10x bAccGen1 83.17 Gbp 59.49x 40.1 GiB
Arima bAccGen1 68.59 Gbp 49.06x 31.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.40 Gbp.
Last upload on 3 May 2022.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bAccGen1 PacBio HiFi (.bam) 50.34 Gbp 36.01x 78.3 GiB
10x 83.17 Gbp 59.49x 40.1 GiB
Arima 68.59 Gbp 49.06x 31.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.40 Gbp.
Last upload on 3 May 2022.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 4 February 2022
bAccGen1.pri.cur.20220204.fasta.gz (382.5 MiB)

Quality: 12.3 errors/Mb (QV=49.11)

Contigs Scaffolds
NG LG Len LG Len
10 3 37.31 Mbp 1 55.81 Mbp
20 7 29.00 Mbp 4 48.36 Mbp
30 12 24.90 Mbp 7 44.90 Mbp
40 19 20.60 Mbp 10 41.28 Mbp
50 26 17.71 Mbp 14 35.03 Mbp
60 35 12.27 Mbp 18 31.04 Mbp
70 49 8.94 Mbp 23 27.20 Mbp
80 68 5.74 Mbp 29 21.93 Mbp
90 109 2.01 Mbp 36 10.40 Mbp
100 637 1.00 Kbp 454 1.00 Kbp
1.000x 638 1.40 Gbp 455 1.40 Gbp
NG based on genome size 1.40 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 4 February 2022
bAccGen1.alt.cur.20220204.fasta.gz (311.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 33 2.20 Mbp 33 2.20 Mbp
20 96 1.54 Mbp 96 1.54 Mbp
30 179 1.18 Mbp 179 1.18 Mbp
40 288 0.89 Mbp 288 0.89 Mbp
50 429 0.70 Mbp 429 0.70 Mbp
60 611 0.53 Mbp 611 0.53 Mbp
70 856 384.68 Kbp 856 385.03 Kbp
80 1221 239.81 Kbp 1220 239.94 Kbp
90 1901 107.53 Kbp 1900 107.65 Kbp
100 4485 3.98 Kbp 4483 3.98 Kbp
1.000x 4486 1.11 Gbp 4484 1.11 Gbp
NG based on genome size 1.40 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.