Anas acuta

northern pintail

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bAnaAcu
  name: Anas acuta
  taxon_id: 28680
  common_name: northern pintail
  order:
    name: Anseriformes
  family:
    name: Anatidae
  individuals:
    - short_name: bAnaAcu1
      biosample_id: SAMEA112468036
      sex: male
  genome_size: 1378980000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bAnaAcu1 31.81 Gbp 23.07x 19.4 GiB
Arima bAnaAcu1 53.96 Gbp 39.13x 16.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.38 Gbp.
Last upload on 18 July 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bAnaAcu1 PacBio HiFi (.bam) 31.81 Gbp 23.07x 19.4 GiB
Arima 53.96 Gbp 39.13x 16.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.38 Gbp.
Last upload on 18 July 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 1 February 2024
bAnaAcu1.pri.cur.20240201.fasta.gz (333.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 13 8.94 Mbp 1 205.01 Mbp
20 32 6.39 Mbp 2 157.35 Mbp
30 58 4.80 Mbp 3 119.29 Mbp
40 90 3.78 Mbp 4 78.26 Mbp
50 132 2.87 Mbp 6 65.85 Mbp
60 192 1.95 Mbp 10 30.11 Mbp
70 280 1.26 Mbp 16 21.13 Mbp
80 451 498.94 Kbp 26 7.69 Mbp
90 0 0
100 0 0
0.862x 1026 1.19 Gbp 395 1.19 Gbp
NG based on genome size 1.38 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 1 February 2024
bAnaAcu1.alt.cur.20240201.fasta.gz (303.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 31 3.26 Mbp 31 3.26 Mbp
20 82 2.31 Mbp 82 2.31 Mbp
30 152 1.71 Mbp 152 1.71 Mbp
40 246 1.25 Mbp 246 1.25 Mbp
50 377 0.90 Mbp 377 0.90 Mbp
60 564 0.59 Mbp 564 0.59 Mbp
70 898 272.96 Kbp 898 272.96 Kbp
80 0 0
90 0 0
100 0 0
0.767x 1961 1.06 Gbp 1960 1.06 Gbp
NG based on genome size 1.38 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 29 July 2023
bAnaAcu1.MT.20230729.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.