Anomaloglossus baeobatrachus

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Copyright Antoine Fouquet, used with permission
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (subreads) aAnoBae1 562.62 Gbp N/A 1.3 TiB
PacBio HiFi (.fq) aAnoBae1 144.65 Gbp N/A 116.0 GiB
Arima aAnoBae1 360.39 Gbp N/A 187.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 11 September 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
aAnoBae1 PacBio HiFi (subreads) 562.62 Gbp N/A 1.3 TiB
PacBio HiFi (.fq) 144.65 Gbp N/A 116.0 GiB
Arima 360.39 Gbp N/A 187.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 11 September 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 24 February 2025
aAnoBae1.hap1.cur.20250224.fasta.gz (1.6 GiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 60 7.80 Mbp 1 0.98 Gbp
20 155 5.72 Mbp 2 0.80 Gbp
30 277 4.63 Mbp 3 0.71 Gbp
40 430 3.64 Mbp 4 0.71 Gbp
50 626 2.84 Mbp 4 0.71 Gbp
60 879 2.17 Mbp 5 0.60 Gbp
70 1220 1.54 Mbp 7 311.69 Mbp
80 1732 0.98 Mbp 9 233.34 Mbp
90 2633 465.85 Kbp 12 148.77 Mbp
100 7414 2.01 Kbp 3642 2.32 Kbp
1.000x 7414 6.26 Gbp 3642 6.27 Gbp
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 24 February 2025
aAnoBae1.hap2.cur.20250224.fasta.gz (1.6 GiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 62 7.53 Mbp 1 0.97 Gbp
20 155 5.90 Mbp 2 0.80 Gbp
30 275 4.46 Mbp 3 0.71 Gbp
40 429 3.58 Mbp 3 0.71 Gbp
50 622 2.79 Mbp 4 0.70 Gbp
60 876 2.14 Mbp 5 0.60 Gbp
70 1212 1.56 Mbp 6 0.58 Gbp
80 1692 1.03 Mbp 8 261.32 Mbp
90 2496 0.52 Mbp 11 190.82 Mbp
100 6225 1 bp 2426 4.84 Kbp
1.000x 6225 6.13 Gbp 2426 6.13 Gbp
NG based on genome size .
Assembly Metadata
assembly_vgp_HiC_2.0/aAnoBae1_hap1.yml (view)
species: Anomaloglossus baeobatrachus
specimen: aAnoBae1
projects: 
  - vgp
assembled_by_group: Rockefeller
data_location: S3
release_to: S3
haplotype_to_curate: hap1
hap1: s3://genomeark/species/Anomaloglossus_baeobatrachus/aAnoBae1/assembly_vgp_HiC_2.0/aAnoBae1.HiC.hap1.20230617.fasta.gz
hap2: s3://genomeark/species/Anomaloglossus_baeobatrachus/aAnoBae1/assembly_vgp_HiC_2.0/aAnoBae1.HiC.hap2.20230617.fasta.gz
pretext_hap1: s3://genomeark/species/Anomaloglossus_baeobatrachus/aAnoBae1/assembly_vgp_HiC_2.0/evaluation/hap1/pretext/aAnoBae1_hap1_s2.pretext
pretext_hap2: s3://genomeark/species/Anomaloglossus_baeobatrachus/aAnoBae1/assembly_vgp_HiC_2.0/evaluation/hap2/pretext/aAnoBae1_hap2_s2.pretext
kmer_spectra_img: s3://genomeark/species/Anomaloglossus_baeobatrachus/aAnoBae1/assembly_vgp_HiC_2.0/evaluation/merqury/aAnoBae1_png/
pacbio_read_dir: s3://genomeark/species/Anomaloglossus_baeobatrachus/aAnoBae1/genomic_data/pacbio_hifi/
pacbio_read_type: hifi
hic_read_dir: s3://genomeark/species/Anomaloglossus_baeobatrachus/aAnoBae1/genomic_data/arima/
pipeline: 
  - hifiasm (1.2a.2+galaxy1)
  - yahs (1.2a.2+galaxy1)
notes: This was a Hifiasm-HiC assembly of aAnoBae1, resulting in two complete haplotypes. HiC scaffolding was performed with YaHS.  The HiC prep kit used was Swift-IDT. 
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.