Aplidium turbinatum

A colonial sea squirt

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank kaAplTurb1: GCA_918807975.1 kaAplTurb1: GCA_918843895.1
ENA kaAplTurb1: GCA_918807975.1 kaAplTurb1: GCA_918843895.1
UCSC Genome Browser kaAplTurb1: GCA_918807975.1 kaAplTurb1: GCA_918843895.1

metadata.yaml (view) (edit on github)
species:
  short_name: kaAplTurb
  name: Aplidium turbinatum
  taxon_id: 2771288
  common_name: A colonial sea squirt
  order:
    name: Aplousobranchia
  family:
    name: Polyclinidae
  individuals:
    - short_name: kaAplTurb1
      biosample_id: SAMEA7536566
      sex:
  genome_size: 437655000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) kaAplTurb1 34.94 Gbp 79.84x 95.9 GiB
Arima kaAplTurb1 116.00 Gbp 265.06x 35.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 437.66 Mbp.
Last upload on 9 February 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
kaAplTurb1 PacBio HiFi (.bam) 34.94 Gbp 79.84x 95.9 GiB
Arima 116.00 Gbp 265.06x 35.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 437.66 Mbp.
Last upload on 9 February 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 9 March 2023
kaAplTurb1.pri.cur.20230309.fasta.gz (172.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 1 44.55 Mbp 1 64.35 Mbp
20 3 31.69 Mbp 2 56.99 Mbp
30 4 26.39 Mbp 3 47.73 Mbp
40 6 21.28 Mbp 4 46.99 Mbp
50 8 18.87 Mbp 5 39.00 Mbp
60 11 15.92 Mbp 6 36.09 Mbp
70 13 14.92 Mbp 7 34.01 Mbp
80 16 13.60 Mbp 8 33.25 Mbp
90 20 9.94 Mbp 10 27.33 Mbp
100 25 8.89 Mbp 11 27.06 Mbp
1.383x 80 0.61 Gbp 27 0.61 Gbp
NG based on genome size 437.66 Mbp.
Individual 1 Alternate Assembly
Version assembly_curated from 9 March 2023
kaAplTurb1.alt.cur.20230309.fasta.gz (141.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 13 2.12 Mbp 13 2.12 Mbp
20 39 1.34 Mbp 39 1.34 Mbp
30 78 1.01 Mbp 78 1.01 Mbp
40 126 0.81 Mbp 126 0.81 Mbp
50 186 0.67 Mbp 186 0.67 Mbp
60 259 0.54 Mbp 259 0.54 Mbp
70 352 399.80 Kbp 352 399.80 Kbp
80 486 269.57 Kbp 486 269.57 Kbp
90 702 149.88 Kbp 702 149.88 Kbp
100 1113 76.47 Kbp 1112 76.49 Kbp
1.116x 2371 488.60 Mbp 2370 488.60 Mbp
NG based on genome size 437.66 Mbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.