Balaenoptera borealis

sei whale

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mBalBor
  name: Balaenoptera borealis
  taxon_id: 9768
  common_name: sei whale
  order:
    name: Cetacea
  family:
    name: Balaenopteridae
  individuals:
    - short_name: mBalBor1
      biosample_id: SAMEA114493134
      sex: female
  genome_size: 2865540000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mBalBor1 131.41 Gbp 45.86x 44.0 GiB
Arima mBalBor1 510.51 Gbp 178.15x 139.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.87 Gbp.
Last upload on 23 May 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mBalBor1 PacBio HiFi (.bam) 131.41 Gbp 45.86x 44.0 GiB
Arima 510.51 Gbp 178.15x 139.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.87 Gbp.
Last upload on 23 May 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 1 March 2025
mBalBor1.hap1.cur.20250301.fasta.gz (781.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 31 7.62 Mbp 2 185.65 Mbp
20 75 5.75 Mbp 4 150.72 Mbp
30 129 4.86 Mbp 5 146.86 Mbp
40 195 3.87 Mbp 8 130.58 Mbp
50 279 3.06 Mbp 10 120.41 Mbp
60 386 2.36 Mbp 12 115.83 Mbp
70 523 1.85 Mbp 15 92.22 Mbp
80 705 1.33 Mbp 18 84.62 Mbp
90 971 0.86 Mbp 26 3.05 Mbp
100 1410 490.26 Kbp 313 0.58 Mbp
1.129x 3751 3.23 Gbp 2572 3.23 Gbp
NG based on genome size 2.87 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 1 March 2025
mBalBor1.hap2.cur.20250301.fasta.gz (761.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 31 7.45 Mbp 2 184.76 Mbp
20 75 5.80 Mbp 4 144.28 Mbp
30 129 4.71 Mbp 6 128.79 Mbp
40 197 3.73 Mbp 8 120.23 Mbp
50 285 2.96 Mbp 11 105.95 Mbp
60 395 2.28 Mbp 13 91.31 Mbp
70 541 1.70 Mbp 17 85.64 Mbp
80 746 1.14 Mbp 20 60.66 Mbp
90 1073 0.66 Mbp 140 0.96 Mbp
100 1776 234.00 Kbp 724 250.78 Kbp
1.043x 2917 2.99 Gbp 1851 2.99 Gbp
NG based on genome size 2.87 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 31 May 2024
mBalBor1.MT.20240531.fasta.gz (5.2 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.