Balaenoptera musculus

blue whale

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank mBalMus1: GCA_009873245.3 mBalMus1: GCA_008658375.2
ENA mBalMus1: GCA_009873245.3 mBalMus1: GCA_008658375.2
UCSC Genome Browser mBalMus1: GCA_009873245.3 mBalMus1: GCA_008658375.2

metadata.yaml (view) (edit on github)
species:
  short_name: mBalMus
  name: Balaenoptera musculus
  taxon_id: 9771
  common_name: blue whale
  order:
    name: Cetacea
  family:
    name: Balaenopteridae
  individuals:
    - short_name: mBalMus1
  genome_size: 3093707188
  genome_size_method: genomescope (k=31)
  project: [ vgp ]
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Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR mBalMus1 158.26 Gbp 51.16x 283.7 GiB
10x mBalMus1 322.69 Gbp 104.30x 185.9 GiB
Bionano mBalMus1 N/A 469.63x 2.0 GiB
Dovetail Genomics mBalMus1 118.44 Gbp 38.28x 70.9 GiB
Illumina mBalMus1 381.77 Gbp 123.40x 187.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.09 Gbp.
Last upload on 18 March 2020.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mBalMus1 PacBio CLR 158.26 Gbp 51.16x 283.7 GiB
10x 322.69 Gbp 104.30x 185.9 GiB
Bionano N/A 469.63x 2.0 GiB
Dovetail Genomics 118.44 Gbp 38.28x 70.9 GiB
Illumina 381.77 Gbp 123.40x 187.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.09 Gbp.
Last upload on 18 March 2020.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 28 May 2020
mBalMus1.pri.cur.20200528.fasta.gz (662.8 MiB)

Quality: 70.9 errors/Mb (QV=41.49)

Contigs Scaffolds
NG LG Len LG Len
10 12 16.53 Mbp 1 175.90 Mbp
20 35 11.20 Mbp 3 144.97 Mbp
30 68 8.29 Mbp 5 128.88 Mbp
40 113 5.89 Mbp 8 110.31 Mbp
50 173 4.49 Mbp 11 104.07 Mbp
60 260 2.77 Mbp 14 90.46 Mbp
70 426 1.16 Mbp 18 79.66 Mbp
80 0 0
90 0 0
100 0 0
0.759x 991 2.35 Gbp 105 2.37 Gbp
NG based on genome size 3.09 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 28 May 2020
mBalMus1.alt.cur.20200528.fasta.gz (513.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 432 0.55 Mbp 432 0.55 Mbp
20 1117 376.33 Kbp 1117 376.33 Kbp
30 2085 272.87 Kbp 2085 272.87 Kbp
40 3460 187.09 Kbp 3460 187.09 Kbp
50 5613 107.61 Kbp 5613 107.61 Kbp
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.593x 10999 1.84 Gbp 10996 1.84 Gbp
NG based on genome size 3.09 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
mBalMus1.MT.20191002.fasta.gz (4.9 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.