Centurio senex

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Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) mCenSen1 114.85 Gbp N/A 92.6 GiB
PacBio HiFi (.bam) mCenSen1 506.90 Gbp N/A 408.1 GiB
Arima mCenSen1 147.24 Gbp N/A 81.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 14 July 2026.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mCenSen1 PacBio HiFi (.fq) 114.85 Gbp N/A 92.6 GiB
PacBio HiFi (.bam) 506.90 Gbp N/A 408.1 GiB
Arima 147.24 Gbp N/A 81.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 14 July 2026.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 18 June 2024
mCenSen1.hap1.cur.20240618.fasta.gz (649.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 88.12 Mbp 1 243.30 Mbp
20 6 78.89 Mbp 3 187.61 Mbp
30 9 71.84 Mbp 4 183.15 Mbp
40 12 59.06 Mbp 5 159.76 Mbp
50 17 44.37 Mbp 7 152.40 Mbp
60 23 37.79 Mbp 9 134.10 Mbp
70 30 32.49 Mbp 10 132.55 Mbp
80 38 17.95 Mbp 12 111.89 Mbp
90 68 3.28 Mbp 16 4.91 Mbp
100 896 12.87 Kbp 811 12.87 Kbp
1.000x 896 2.38 Gbp 811 2.38 Gbp
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 18 June 2024
mCenSen1.hap2.cur.20240618.fasta.gz (640.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 126.79 Mbp 1 243.46 Mbp
20 4 112.06 Mbp 3 186.87 Mbp
30 7 71.05 Mbp 4 182.99 Mbp
40 11 57.24 Mbp 5 162.73 Mbp
50 16 44.33 Mbp 7 151.55 Mbp
60 21 36.42 Mbp 8 135.75 Mbp
70 29 28.75 Mbp 10 133.30 Mbp
80 40 16.63 Mbp 12 110.65 Mbp
90 61 5.56 Mbp 14 94.15 Mbp
100 734 10.00 Kbp 654 10.00 Kbp
1.000x 734 2.33 Gbp 654 2.33 Gbp
NG based on genome size .
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 19 August 2025
mCenSen1.MT.20250819.fasta.gz (5.3 KiB)

Quality: not computed
Assembly Metadata
assembly_vgp_HiC_2.0/mCenSen1.yml (view)
species: Centurio senex
specimem: mCenSen1
projects:
  - paratus
assembled_by_group: Rockefeller
data_location: S3
release_to: S3
combine_for_curation:
hap1: s3://paratus-collab/VGL/draft_assemblies/species/Centurio_senex/mCenSen1/assembly_vgp_HiC_2.0/evaluation/mCenSen1.HiC.hap1.20231211.fasta.gz
hap2: s3://paratus-collab/VGL/draft_assemblies/species/Centurio_senex/mCenSen1/assembly_vgp_HiC_2.0/evaluation/mCenSen1.HiC.hap2.20231211.fasta.gz
pretext_hap1: s3://paratus-collab/VGL/draft_assemblies/species/Centurio_senex/mCenSen1/assembly_vgp_HiC_2.0/evaluation/hap1/pretext/mCenSen1_hap1__s2_heatmap.pretext
pretext_hap2: s3://paratus-collab/VGL/draft_assemblies/species/Centurio_senex/mCenSen1/assembly_vgp_HiC_2.0/evaluation/hap2/pretext/mCenSen1_hap2__s2_heatmap.pretext
kmer_spectra_img: s3://paratus-collab/VGL/draft_assemblies/species/Centurio_senex/mCenSen1/assembly_vgp_HiC_2.0/evaluation/merqury/mCenSen1_png/
pacbio_read_dir:
pacbio_read_type:
hic_read_dir:
pipeline:
  - hifiasm (0.19.3+galaxy0)
  - yahs (1.2a.2+galaxy1)
notes:
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.