Cetorhinus maximus

Basking shark

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: sCetMax
  name: Cetorhinus maximus
  taxon_id: 57982
  common_name: Basking shark
  order:
    name: Lamniformes
  family:
    name: Cetorhinidae
  individuals:
    - short_name: sCetMax3
      biosample_id: SAMEA113902670
      sex: female
  genome_size: 6019590000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) sCetMax3 124.81 Gbp 20.73x 41.8 GiB
Arima sCetMax3 883.97 Gbp 146.85x 233.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 6.02 Gbp.
Last upload on 11 May 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
sCetMax3 PacBio HiFi (.bam) 124.81 Gbp 20.73x 41.8 GiB
Arima 883.97 Gbp 146.85x 233.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 6.02 Gbp.
Last upload on 11 May 2024.
Assemblies
Individual 3 Haplotype 1 Assembly
Version assembly_curated from 24 June 2024
sCetMax3.hap1.cur.20240624.fasta.gz (1.1 GiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 77 5.66 Mbp 3 211.65 Mbp
20 218 3.32 Mbp 6 158.55 Mbp
30 440 2.26 Mbp 11 129.01 Mbp
40 773 1.46 Mbp 16 106.58 Mbp
50 1322 0.81 Mbp 22 80.59 Mbp
60 2526 285.14 Kbp 120 0.72 Mbp
70 0 0
80 0 0
90 0 0
100 0 0
0.663x 7866 3.99 Gbp 5088 3.99 Gbp
NG based on genome size 6.02 Gbp.
Individual 3 Haplotype 2 Assembly
Version assembly_curated from 24 June 2024
sCetMax3.hap2.cur.20240624.fasta.gz (1.0 GiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 76 5.76 Mbp 3 211.98 Mbp
20 213 3.44 Mbp 7 148.33 Mbp
30 431 2.24 Mbp 11 127.93 Mbp
40 771 1.40 Mbp 16 105.16 Mbp
50 1350 0.77 Mbp 22 80.10 Mbp
60 2805 193.15 Kbp 227 349.73 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.634x 6569 3.82 Gbp 3829 3.82 Gbp
NG based on genome size 6.02 Gbp.
Individual 3 Mitochondrial Assembly
Version assembly_MT_cambridge from 15 May 2024
sCetMax3.MT.20240515.fasta.gz (5.2 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.