Coregonus lavaretus

common whitefish

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fCorLav
  name: Coregonus lavaretus
  taxon_id: 59291
  common_name: common whitefish
  order:
    name: Salmoniformes
  family:
    name: Salmonidae
  individuals:
    - short_name: fCorLav1
      biosample_id: SAMEA111528661
      sex: male
  genome_size: 3041580000
  genome_size_method: GoaT
  project: [ vgp ]
CC BY-SA 3.0 Apple2000 (Wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fCorLav1 106.44 Gbp 35.00x 117.9 GiB
Arima fCorLav1 383.02 Gbp 125.93x 120.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.04 Gbp.
Last upload on 12 December 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fCorLav1 PacBio HiFi (.bam) 106.44 Gbp 35.00x 117.9 GiB
Arima 383.02 Gbp 125.93x 120.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.04 Gbp.
Last upload on 12 December 2023.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 7 September 2024
fCorLav1.hap1.cur.20240907.fasta.gz (750.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 107 2.11 Mbp 4 79.89 Mbp
20 291 1.36 Mbp 8 63.20 Mbp
30 563 0.91 Mbp 13 54.07 Mbp
40 963 0.63 Mbp 19 49.02 Mbp
50 1561 418.40 Kbp 26 46.54 Mbp
60 2471 272.57 Kbp 33 38.52 Mbp
70 3905 167.11 Kbp 84 0.80 Mbp
80 6383 90.48 Kbp 1113 140.76 Kbp
90 11625 35.12 Kbp 5667 37.05 Kbp
100 0 0
0.934x 17145 2.84 Gbp 11150 2.84 Gbp
NG based on genome size 3.04 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 7 September 2024
fCorLav1.hap2.cur.20240907.fasta.gz (627.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 111 2.04 Mbp 4 71.91 Mbp
20 298 1.33 Mbp 9 58.86 Mbp
30 573 0.92 Mbp 15 48.56 Mbp
40 975 0.63 Mbp 21 45.91 Mbp
50 1572 415.84 Kbp 28 40.39 Mbp
60 2513 249.85 Kbp 37 28.62 Mbp
70 4195 128.50 Kbp 406 305.70 Kbp
80 0 0
90 0 0
100 0 0
0.773x 8669 2.35 Gbp 3980 2.35 Gbp
NG based on genome size 3.04 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 15 March 2024
fCorLav1.MT.20240315.fasta.gz (5.1 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.