Corella eumyota

Orange-tipped sea squirt

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: kaCorEumy
  name: Corella eumyota
  taxon_id: 431183
  common_name: Orange-tipped sea squirt
  order:
    name: Enterogona
  family:
    name: Corellidae
  individuals:
    - short_name: kaCorEumy4
      biosample_id: SAMEA7536466
      sex:
  genome_size: 151590000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) kaCorEumy4 20.28 Gbp 133.78x 11.7 GiB
Arima kaCorEumy4 108.00 Gbp 712.48x 32.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 151.59 Mbp.
Last upload on 9 February 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
kaCorEumy4 PacBio HiFi (.bam) 20.28 Gbp 133.78x 11.7 GiB
Arima 108.00 Gbp 712.48x 32.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 151.59 Mbp.
Last upload on 9 February 2023.
Assemblies
Individual 4 Primary Assembly
Version assembly_curated from 5 August 2023
kaCorEumy4.pri.cur.20230805.fasta.gz (33.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 11.68 Mbp 1 23.72 Mbp
20 3 9.39 Mbp 2 21.79 Mbp
30 5 7.13 Mbp 2 21.79 Mbp
40 7 5.75 Mbp 3 20.55 Mbp
50 10 4.29 Mbp 4 17.83 Mbp
60 15 2.66 Mbp 5 15.63 Mbp
70 21 1.71 Mbp 6 15.52 Mbp
80 41 247.13 Kbp 7 12.49 Mbp
90 0 0
100 0 0
0.853x 349 129.28 Mbp 105 129.32 Mbp
NG based on genome size 151.59 Mbp.
Individual 4 Alternate Assembly
Version assembly_curated from 5 August 2023
kaCorEumy4.alt.cur.20230805.fasta.gz (617.8 KiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 0 0
20 0 0
30 0 0
40 0 0
50 0 0
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.020x 70 2.98 Mbp 70 2.98 Mbp
NG based on genome size 151.59 Mbp.
Individual 4 Mitochondrial Assembly
Version assembly_MT_cambridge from 10 February 2023
kaCorEumy4.MT.20230210.fasta.gz (3.8 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.