Cygnus columbianus

tundra swan

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bCygCol
  name: Cygnus columbianus
  taxon_id: 110926
  common_name: tundra swan
  order:
    name: Anseriformes
  family:
    name: Anatidae
  individuals:
    - short_name: bCygCol1
      biosample_id: SAMEA112468031
      sex: female
  genome_size: 1471890000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bCygCol1 61.01 Gbp 41.45x 22.5 GiB
Arima bCygCol1 90.70 Gbp 61.62x 29.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.47 Gbp.
Last upload on 14 August 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bCygCol1 PacBio HiFi (.bam) 61.01 Gbp 41.45x 22.5 GiB
Arima 90.70 Gbp 61.62x 29.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.47 Gbp.
Last upload on 14 August 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 13 February 2025
bCygCol1.pri.cur.20250213.fasta.gz (351.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 12 10.90 Mbp 1 211.45 Mbp
20 29 7.27 Mbp 2 162.14 Mbp
30 52 5.45 Mbp 3 121.07 Mbp
40 83 4.15 Mbp 5 78.16 Mbp
50 123 3.30 Mbp 7 40.83 Mbp
60 175 2.37 Mbp 11 23.24 Mbp
70 257 1.35 Mbp 18 17.39 Mbp
80 418 0.58 Mbp 42 1.52 Mbp
90 0 0
100 0 0
0.879x 1143 1.29 Gbp 603 1.29 Gbp
NG based on genome size 1.47 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 13 February 2025
bCygCol1.alt.cur.20250213.fasta.gz (310.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 22 4.75 Mbp 1 190.44 Mbp
20 60 3.25 Mbp 2 159.96 Mbp
30 113 2.38 Mbp 3 118.84 Mbp
40 186 1.73 Mbp 5 65.00 Mbp
50 288 1.24 Mbp 9 26.57 Mbp
60 438 0.77 Mbp 16 17.39 Mbp
70 708 368.23 Kbp 39 1.57 Mbp
80 0 0
90 0 0
100 0 0
0.780x 1698 1.15 Gbp 600 1.15 Gbp
NG based on genome size 1.47 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 15 August 2023
bCygCol1.MT.20230815.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.