Electrona antarctica

Antarctic lanternfish

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fEleAnt2: GCA_951216825.1 fEleAnt2: GCA_951214905.1
ENA fEleAnt2: GCA_951216825.1 fEleAnt2: GCA_951214905.1
UCSC Genome Browser fEleAnt2: GCA_951216825.1 fEleAnt2: GCA_951214905.1

metadata.yaml (view) (edit on github)
species:
  short_name: fEleAnt
  name: Electrona antarctica
  taxon_id: 206093
  common_name: Antarctic lanternfish
  order:
    name: Myctophiformes
  family:
    name: Myctophidae
  individuals:
    - short_name: fEleAnt2
      biosample_id: SAMEA8748807
      sex: female
    - short_name: fEleAnt3
      biosample_id: SAMEA8748808
      sex:
  genome_size:
  genome_size_method:
  project: [ vgp ]
public domain
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fEleAnt2 47.81 Gbp 33.50x 90.5 GiB
Arima fEleAnt3 253.51 Gbp 177.60x 119.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.43 Gbp.
Last upload on 9 March 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fEleAnt2 PacBio HiFi (.bam) 47.81 Gbp 33.50x 90.5 GiB
fEleAnt3 Arima 253.51 Gbp 177.60x 119.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.43 Gbp.
Last upload on 9 March 2023.
Assemblies
Individual 2 Primary Assembly
Version assembly_curated from 3 May 2023
fEleAnt2.pri.cur.20230503.fasta.gz (360.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 28 3.78 Mbp 3 63.62 Mbp
20 76 2.45 Mbp 5 60.55 Mbp
30 143 1.87 Mbp 7 59.04 Mbp
40 233 1.35 Mbp 10 56.06 Mbp
50 355 1.00 Mbp 12 53.63 Mbp
60 523 0.71 Mbp 15 49.80 Mbp
70 774 461.38 Kbp 18 48.16 Mbp
80 1172 278.93 Kbp 21 42.90 Mbp
90 1906 131.03 Kbp 30 1.11 Mbp
100 5080 1.00 Kbp 1901 1.00 Kbp
1.000x 5080 1.43 Gbp 1901 1.43 Gbp
NG based on genome size 1.43 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 3 May 2023
fEleAnt2.alt.cur.20230503.fasta.gz (339.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 116 0.83 Mbp 116 0.83 Mbp
20 306 0.58 Mbp 306 0.58 Mbp
30 571 424.61 Kbp 571 424.61 Kbp
40 923 322.59 Kbp 923 322.59 Kbp
50 1387 245.51 Kbp 1387 245.51 Kbp
60 2002 183.54 Kbp 2002 183.54 Kbp
70 2841 130.53 Kbp 2841 130.53 Kbp
80 4071 85.71 Kbp 4071 85.71 Kbp
90 6180 43.23 Kbp 6180 43.23 Kbp
100 11436 1.55 Kbp 11436 1.55 Kbp
1.000x 11436 1.30 Gbp 11436 1.30 Gbp
NG based on genome size 1.43 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.