Equus grevyi

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CC BY-SA 2.5 André Karwath (Wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) mEquGre1 108.19 Gbp N/A 50.3 GiB
PacBio HiFi (.bam) mEquGre1 109.63 Gbp N/A 365.2 GiB
Arima mEquGre1 348.66 Gbp N/A 172.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 24 January 2025.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mEquGre1 PacBio HiFi (.fq) 108.19 Gbp N/A 50.3 GiB
PacBio HiFi (.bam) 109.63 Gbp N/A 365.2 GiB
Arima 348.66 Gbp N/A 172.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 24 January 2025.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_vgp_HiC_2.0 from 15 February 2025
mEquGre1.HiC.hap1.20250215.fasta.gz (742.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 130.79 Mbp 2 192.39 Mbp
20 5 100.34 Mbp 3 188.14 Mbp
30 8 79.40 Mbp 5 151.12 Mbp
40 11 65.28 Mbp 6 139.96 Mbp
50 16 53.18 Mbp 8 136.88 Mbp
60 21 41.92 Mbp 10 131.13 Mbp
70 28 35.89 Mbp 13 93.00 Mbp
80 37 24.45 Mbp 16 69.36 Mbp
90 59 5.31 Mbp 21 36.30 Mbp
100 1062 17.04 Kbp 985 17.04 Kbp
1.000x 1062 2.67 Gbp 985 2.67 Gbp
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_vgp_HiC_2.0 from 15 February 2025
mEquGre1.HiC.hap2.20250215.fasta.gz (724.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 98.23 Mbp 2 188.70 Mbp
20 5 84.48 Mbp 3 187.79 Mbp
30 8 79.52 Mbp 4 162.99 Mbp
40 12 64.98 Mbp 6 143.26 Mbp
50 16 59.29 Mbp 8 134.63 Mbp
60 21 41.16 Mbp 10 127.83 Mbp
70 28 31.15 Mbp 12 117.94 Mbp
80 38 22.07 Mbp 14 84.48 Mbp
90 56 7.95 Mbp 19 41.16 Mbp
100 486 15.84 Kbp 381 15.84 Kbp
1.000x 486 2.53 Gbp 381 2.53 Gbp
NG based on genome size .
Individual 2 Haplotype 1 Assembly
Version assembly_curated from 18 March 2025
mEquGre2.hap1.cur.20250318.fa.gz (739.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
0 0 0 0 0
NG based on genome size .
Individual 2 Haplotype 2 Assembly
Version assembly_curated from 18 March 2025
mEquGre2.hap2.cur.20250318.fa.gz (668.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
0 0 0 0 0
NG based on genome size .
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.